miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 10428 0.68 0.827164
Target:  5'- -aCCaCCGAc-GCCacuuGGCGCGCCucGUCGCu -3'
miRNA:   3'- uaGG-GGCUuuUGG----UCGCGUGG--CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 145724 0.68 0.827164
Target:  5'- -gCCCCGGccccGGCCcGCGCcCCGcCGCc -3'
miRNA:   3'- uaGGGGCUu---UUGGuCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25160 0.68 0.827164
Target:  5'- cUCCCgCGggGGCC-GCGCcccccgccccGCCGaCGCc -3'
miRNA:   3'- uAGGG-GCuuUUGGuCGCG----------UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 24401 0.68 0.827164
Target:  5'- -gCCCCGuu-GCCgucGGCgGCGgCGUCGCc -3'
miRNA:   3'- uaGGGGCuuuUGG---UCG-CGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 82150 0.68 0.827164
Target:  5'- cUCCCCGGGAcCCAGCcgaccaCGCgGcCGCg -3'
miRNA:   3'- uAGGGGCUUUuGGUCGc-----GUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 24286 0.68 0.827164
Target:  5'- -gCCCCugcuggcgcgcGAGAACgCGGCGCugACCGgggCGCg -3'
miRNA:   3'- uaGGGG-----------CUUUUG-GUCGCG--UGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 115495 0.68 0.824628
Target:  5'- -aCCCCGucGAGGCCgcgaauccguacggGGCGUA-CGUCGCg -3'
miRNA:   3'- uaGGGGC--UUUUGG--------------UCGCGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 70222 0.68 0.81865
Target:  5'- -cCCUCGAgcGAGCCGGCGgGCag-CGCg -3'
miRNA:   3'- uaGGGGCU--UUUGGUCGCgUGgcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 66646 0.68 0.81865
Target:  5'- cGUCCCCcaGAAACC-GCGCcACCGccucCGCg -3'
miRNA:   3'- -UAGGGGc-UUUUGGuCGCG-UGGCa---GCG- -5'
5504 5' -56.2 NC_001798.1 + 48366 0.68 0.81865
Target:  5'- --gCCCGggGccGCCccgcggGGCGUGCCGcCGCg -3'
miRNA:   3'- uagGGGCuuU--UGG------UCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 4975 0.68 0.81865
Target:  5'- -gCCCCGcgGcCCuGCGCGUCGUCGUc -3'
miRNA:   3'- uaGGGGCuuUuGGuCGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 110400 0.68 0.809966
Target:  5'- -aCCCCGAAcguguuuuCCAGCGacguGCCGUcCGUg -3'
miRNA:   3'- uaGGGGCUUuu------GGUCGCg---UGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 121921 0.68 0.809966
Target:  5'- gAUCCUCGcgcugguCCAGCGgGCCGU-GCa -3'
miRNA:   3'- -UAGGGGCuuuu---GGUCGCgUGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 3285 0.68 0.809966
Target:  5'- --gCUCGucGGCCGGCGaCGCCGcCGCc -3'
miRNA:   3'- uagGGGCuuUUGGUCGC-GUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 56892 0.68 0.809966
Target:  5'- cGUCCUCGA--ACCAGacgaacucCGCGCgGUUGCc -3'
miRNA:   3'- -UAGGGGCUuuUGGUC--------GCGUGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 92283 0.68 0.809966
Target:  5'- uGUCCggCCGAAGGCCuGgaGCuGCUGUCGCu -3'
miRNA:   3'- -UAGG--GGCUUUUGGuCg-CG-UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 130037 0.68 0.809966
Target:  5'- -cCCCCGcgGACCuuGGCGCAUaccccuccacggUGUCGUa -3'
miRNA:   3'- uaGGGGCuuUUGG--UCGCGUG------------GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4114 0.68 0.809089
Target:  5'- -gCCCUGGGcgggcucGGCCGGgGCGCCGcccccggggcccUCGCg -3'
miRNA:   3'- uaGGGGCUU-------UUGGUCgCGUGGC------------AGCG- -5'
5504 5' -56.2 NC_001798.1 + 52468 0.68 0.801122
Target:  5'- -aCCCUGAAAuacgcccugGCCugcggggacGCGCGCCGgCGCa -3'
miRNA:   3'- uaGGGGCUUU---------UGGu--------CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25423 0.68 0.801122
Target:  5'- -gCCUCGcuGGCCGcGCGCugCGcCGCc -3'
miRNA:   3'- uaGGGGCuuUUGGU-CGCGugGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.