miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 47777 0.68 0.798439
Target:  5'- aGUCCCgGGAuACCGcGCgaccgcgucguucgGCGuCCGUCGCg -3'
miRNA:   3'- -UAGGGgCUUuUGGU-CG--------------CGU-GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 47858 0.75 0.44799
Target:  5'- -cCCCCGggGGCCccguGgGCGCCGgcgggCGCu -3'
miRNA:   3'- uaGGGGCuuUUGGu---CgCGUGGCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 48366 0.68 0.81865
Target:  5'- --gCCCGggGccGCCccgcggGGCGUGCCGcCGCg -3'
miRNA:   3'- uagGGGCuuU--UGG------UCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 50090 0.67 0.866939
Target:  5'- cUCCUgCGGAGGCCGGgcuggugGCGCCG-CGCa -3'
miRNA:   3'- uAGGG-GCUUUUGGUCg------CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 51156 0.66 0.901474
Target:  5'- -aCCCCGGGucCCGacGCGCGuCCGagGCc -3'
miRNA:   3'- uaGGGGCUUuuGGU--CGCGU-GGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 52038 0.69 0.764309
Target:  5'- --gCCCGggGugCgcgcgcuccuggGGCGCgACUGUCGCg -3'
miRNA:   3'- uagGGGCuuUugG------------UCGCG-UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 52468 0.68 0.801122
Target:  5'- -aCCCUGAAAuacgcccugGCCugcggggacGCGCGCCGgCGCa -3'
miRNA:   3'- uaGGGGCUUU---------UGGu--------CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 52712 0.71 0.640894
Target:  5'- -cCCCCGccaaauuuugggcGGACguGCGCGCCGcCGCg -3'
miRNA:   3'- uaGGGGCu------------UUUGguCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 53183 0.74 0.485219
Target:  5'- cGUCCCCGAG---CGGCGCAUCuUCGCc -3'
miRNA:   3'- -UAGGGGCUUuugGUCGCGUGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 53223 0.69 0.782986
Target:  5'- -aCCCCGGAGGggcuccUCAGCGCgGCCGUgGg -3'
miRNA:   3'- uaGGGGCUUUU------GGUCGCG-UGGCAgCg -5'
5504 5' -56.2 NC_001798.1 + 53345 0.67 0.835501
Target:  5'- cGUCCCCGAGAGCCugaucguagacgGGCuCGCCa--GCg -3'
miRNA:   3'- -UAGGGGCUUUUGG------------UCGcGUGGcagCG- -5'
5504 5' -56.2 NC_001798.1 + 54651 0.72 0.593958
Target:  5'- -cCCCCGAGcagcggccggcAGCCgcGGCGCGCCcGcUCGCg -3'
miRNA:   3'- uaGGGGCUU-----------UUGG--UCGCGUGG-C-AGCG- -5'
5504 5' -56.2 NC_001798.1 + 55833 0.72 0.593958
Target:  5'- cAUCCCgcguUGAAuuccuGCCAGC-CGCUGUCGCa -3'
miRNA:   3'- -UAGGG----GCUUu----UGGUCGcGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 56261 0.69 0.773711
Target:  5'- -gCCCCGGAGuuACCgcagccgacgauAGCGCACCGaggaggCGUg -3'
miRNA:   3'- uaGGGGCUUU--UGG------------UCGCGUGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 56892 0.68 0.809966
Target:  5'- cGUCCUCGA--ACCAGacgaacucCGCGCgGUUGCc -3'
miRNA:   3'- -UAGGGGCUuuUGGUC--------GCGUGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 57386 0.66 0.9077
Target:  5'- -aCCCgCGAGccguaccgGGCCAGCGggUCGUgGCg -3'
miRNA:   3'- uaGGG-GCUU--------UUGGUCGCguGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 57729 0.7 0.685657
Target:  5'- -cCCCCGcgaAGGACCggugGGCGCGCCcggCGCa -3'
miRNA:   3'- uaGGGGC---UUUUGG----UCGCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 58014 0.71 0.634764
Target:  5'- -aCCCCGAccGCCGGCuCGCCGccaucCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGcGUGGCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 58859 0.66 0.895017
Target:  5'- -gCCCCGAGcGCCAG-GCACUGg--- -3'
miRNA:   3'- uaGGGGCUUuUGGUCgCGUGGCagcg -5'
5504 5' -56.2 NC_001798.1 + 59543 0.66 0.913691
Target:  5'- -aCCCCGGAAggcggagaggggGCUGGgGCuCgCGUCGCc -3'
miRNA:   3'- uaGGGGCUUU------------UGGUCgCGuG-GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.