miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 60142 0.66 0.913691
Target:  5'- uUCCCCGuAGACCgucuuGGCGUugGCgGcCGCu -3'
miRNA:   3'- uAGGGGCuUUUGG-----UCGCG--UGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 62442 0.74 0.475769
Target:  5'- -cCCCCGGAcgucGCCGGUGgGCCG-CGCg -3'
miRNA:   3'- uaGGGGCUUu---UGGUCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 63430 0.67 0.85938
Target:  5'- -cUCCCGAAAcaGCCGguacacGCGCGCCGccUCGg -3'
miRNA:   3'- uaGGGGCUUU--UGGU------CGCGUGGC--AGCg -5'
5504 5' -56.2 NC_001798.1 + 64209 0.67 0.851616
Target:  5'- -aCCCCGA---UCGGaGCGCUGUUGCu -3'
miRNA:   3'- uaGGGGCUuuuGGUCgCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 66406 0.69 0.773711
Target:  5'- --aCCCGuuAACCAGC-CGC-GUCGCa -3'
miRNA:   3'- uagGGGCuuUUGGUCGcGUGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 66646 0.68 0.81865
Target:  5'- cGUCCCCcaGAAACC-GCGCcACCGccucCGCg -3'
miRNA:   3'- -UAGGGGc-UUUUGGuCGCG-UGGCa---GCG- -5'
5504 5' -56.2 NC_001798.1 + 66856 0.7 0.715732
Target:  5'- gGUUUCCGggGagucGCCGGgGCGCCGggGCu -3'
miRNA:   3'- -UAGGGGCuuU----UGGUCgCGUGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 69461 0.73 0.54362
Target:  5'- uGUCCCCcAAAAgCAcCGgGCCGUCGCg -3'
miRNA:   3'- -UAGGGGcUUUUgGUcGCgUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 70222 0.68 0.81865
Target:  5'- -cCCUCGAgcGAGCCGGCGgGCag-CGCg -3'
miRNA:   3'- uaGGGGCU--UUUGGUCGCgUGgcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 70426 0.73 0.54362
Target:  5'- cUCCCCGGGcuGCUGGUGCACCGcaUgGCg -3'
miRNA:   3'- uAGGGGCUUu-UGGUCGCGUGGC--AgCG- -5'
5504 5' -56.2 NC_001798.1 + 70582 0.67 0.842848
Target:  5'- -gCCCUGggGccggugcgcguccGCCAGUGUGCCGUgGa -3'
miRNA:   3'- uaGGGGCuuU-------------UGGUCGCGUGGCAgCg -5'
5504 5' -56.2 NC_001798.1 + 72588 0.66 0.888331
Target:  5'- cGUCCCuCGcGGGGCU-GCGguCCGUCGUc -3'
miRNA:   3'- -UAGGG-GC-UUUUGGuCGCguGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 73308 0.72 0.611273
Target:  5'- --aCCCGGcccacaggacacgcAGGCCcGCGCGCCGUCGa -3'
miRNA:   3'- uagGGGCU--------------UUUGGuCGCGUGGCAGCg -5'
5504 5' -56.2 NC_001798.1 + 74394 0.69 0.745165
Target:  5'- --gCCCGggGGCCguGGCGCcggcggaccugACCGcCGCg -3'
miRNA:   3'- uagGGGCuuUUGG--UCGCG-----------UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 75205 0.69 0.773711
Target:  5'- -cCCCCGGAGccccCCGGCGCcgACCuggCGCa -3'
miRNA:   3'- uaGGGGCUUUu---GGUCGCG--UGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 75996 0.67 0.851616
Target:  5'- -gCCCCGGGcGCCGGCgGCAgggccCCGUgccCGCc -3'
miRNA:   3'- uaGGGGCUUuUGGUCG-CGU-----GGCA---GCG- -5'
5504 5' -56.2 NC_001798.1 + 76572 0.72 0.593958
Target:  5'- -gUCCCGgcGACCGGCcccGCGCCGUaCGUc -3'
miRNA:   3'- uaGGGGCuuUUGGUCG---CGUGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 76615 0.71 0.624546
Target:  5'- uGUCCCCcGAGGCCAcGCGCaugGCCGaagaCGCg -3'
miRNA:   3'- -UAGGGGcUUUUGGU-CGCG---UGGCa---GCG- -5'
5504 5' -56.2 NC_001798.1 + 76940 0.67 0.851616
Target:  5'- -cCCCCGGAAgucacGgCGGCGCugCGg-GCg -3'
miRNA:   3'- uaGGGGCUUU-----UgGUCGCGugGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 77924 0.79 0.245327
Target:  5'- -cCCCCGAGAACCAGCGCcaccccaugcuccccCCGcUCGCc -3'
miRNA:   3'- uaGGGGCUUUUGGUCGCGu--------------GGC-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.