miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 118913 0.71 0.655185
Target:  5'- cGUCUUCGAGGGCCAggcgacggacGUGCGCCuggaGUCGCu -3'
miRNA:   3'- -UAGGGGCUUUUGGU----------CGCGUGG----CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 118813 0.66 0.913691
Target:  5'- -gCCCCGugGACCuggGGCucacgcacgccgGCACCGUCa- -3'
miRNA:   3'- uaGGGGCuuUUGG---UCG------------CGUGGCAGcg -5'
5504 5' -56.2 NC_001798.1 + 117376 0.67 0.851616
Target:  5'- -aCCgCCGucgcGGCCAcGgGCACCGUcCGCa -3'
miRNA:   3'- uaGG-GGCuu--UUGGU-CgCGUGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 117191 0.72 0.614334
Target:  5'- -aCCCCGGGuuCgGGUuCACCGUCGUg -3'
miRNA:   3'- uaGGGGCUUuuGgUCGcGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 116438 0.69 0.773711
Target:  5'- -gCCgCCGAcGACCGGcCGCACCGgccgGCc -3'
miRNA:   3'- uaGG-GGCUuUUGGUC-GCGUGGCag--CG- -5'
5504 5' -56.2 NC_001798.1 + 115495 0.68 0.824628
Target:  5'- -aCCCCGucGAGGCCgcgaauccguacggGGCGUA-CGUCGCg -3'
miRNA:   3'- uaGGGGC--UUUUGG--------------UCGCGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 113618 0.67 0.874287
Target:  5'- uUCUCUGGGAaucGCCuGCGCgGCCGgCGCc -3'
miRNA:   3'- uAGGGGCUUU---UGGuCGCG-UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 111225 0.69 0.773711
Target:  5'- -gUCCCGGccGCCAGCGC---GUCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGCGuggCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 110400 0.68 0.809966
Target:  5'- -aCCCCGAAcguguuuuCCAGCGacguGCCGUcCGUg -3'
miRNA:   3'- uaGGGGCUUuu------GGUCGCg---UGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 110265 0.69 0.745165
Target:  5'- ---aCCGAAAACCGGCGCgACC-UCGg -3'
miRNA:   3'- uaggGGCUUUUGGUCGCG-UGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 110036 0.75 0.429979
Target:  5'- cGUCCCgGAGGccacccACCAGUGUAgcggcCCGUCGCa -3'
miRNA:   3'- -UAGGGgCUUU------UGGUCGCGU-----GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 109677 0.66 0.888331
Target:  5'- cGUCCuCCGGGcGCCguuccuggcgGGCGCGCCcUCGg -3'
miRNA:   3'- -UAGG-GGCUUuUGG----------UCGCGUGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 109372 0.71 0.665372
Target:  5'- --gCCCGggGAgCAGCGgGCUG-CGCg -3'
miRNA:   3'- uagGGGCuuUUgGUCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 108686 0.67 0.85938
Target:  5'- -cCCCCGggGccGCCcGCGgggaCACCGagGCa -3'
miRNA:   3'- uaGGGGCuuU--UGGuCGC----GUGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 108549 0.69 0.73544
Target:  5'- -aCCCCGGc-GCCucCGCGCUGUUGCg -3'
miRNA:   3'- uaGGGGCUuuUGGucGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 108270 0.67 0.866939
Target:  5'- -cCCCCGAc-GCCAGCG-ACCcccagCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGCgUGGca---GCG- -5'
5504 5' -56.2 NC_001798.1 + 104804 0.66 0.881419
Target:  5'- gGUCCCCGAAcgcAACgGGaGCGCgaUCGCg -3'
miRNA:   3'- -UAGGGGCUU---UUGgUCgCGUGgcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 104751 0.66 0.888331
Target:  5'- cGUCgCCGAuuaccgcGGCCAGaCGCGCCaGguagCGCg -3'
miRNA:   3'- -UAGgGGCUu------UUGGUC-GCGUGG-Ca---GCG- -5'
5504 5' -56.2 NC_001798.1 + 104595 0.69 0.764309
Target:  5'- cGUCgCCCGggGccGCCGGUaGCAccCCGUgGCg -3'
miRNA:   3'- -UAG-GGGCuuU--UGGUCG-CGU--GGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 102995 0.66 0.9077
Target:  5'- cUCCacgCCGggGGCCcaGGUGCGCCcGgccagCGCg -3'
miRNA:   3'- uAGG---GGCuuUUGG--UCGCGUGG-Ca----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.