miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 102534 0.67 0.843655
Target:  5'- cGUCCCCGc-GGCCGGCagGCCGcaCGCg -3'
miRNA:   3'- -UAGGGGCuuUUGGUCGcgUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 102191 0.75 0.44799
Target:  5'- --gCCCGGAAGCCuGGCGCGCgG-CGCg -3'
miRNA:   3'- uagGGGCUUUUGG-UCGCGUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 101460 0.67 0.848455
Target:  5'- cUCCCCGugguagucuuCCGG-GCcuuCCGUCGCg -3'
miRNA:   3'- uAGGGGCuuuu------GGUCgCGu--GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 99939 0.66 0.881419
Target:  5'- -gCCCCGGAAuGCCA-CGC-CCG-CGCc -3'
miRNA:   3'- uaGGGGCUUU-UGGUcGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 98764 0.75 0.429979
Target:  5'- -cCCCCGAc-GCCAaCGCgACCGUCGCc -3'
miRNA:   3'- uaGGGGCUuuUGGUcGCG-UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 98607 0.71 0.627611
Target:  5'- -gCCCCGGcgGCCccccgcgccucgggcGGCGUggccgcgACCGUCGCg -3'
miRNA:   3'- uaGGGGCUuuUGG---------------UCGCG-------UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 98179 0.71 0.664354
Target:  5'- uGUUUCCGGAAucacgcccacCCAGCGCGCCGccuggcgauauauUCGCg -3'
miRNA:   3'- -UAGGGGCUUUu---------GGUCGCGUGGC-------------AGCG- -5'
5504 5' -56.2 NC_001798.1 + 97426 0.68 0.792126
Target:  5'- -gCCCCGAGcagugcGACgaggaGGCGCugCGcCGCg -3'
miRNA:   3'- uaGGGGCUU------UUGg----UCGCGugGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 96661 0.67 0.85938
Target:  5'- -cCCCCGAGcggcGCCacGGcCGCGCUGgagCGCg -3'
miRNA:   3'- uaGGGGCUUu---UGG--UC-GCGUGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 95592 0.67 0.835501
Target:  5'- -gCCCUGGucAGCCAGCucgGCGCCGcCGg -3'
miRNA:   3'- uaGGGGCUu-UUGGUCG---CGUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 95023 0.69 0.73544
Target:  5'- --gCCUGGAGGCCGGgGC-CCG-CGCg -3'
miRNA:   3'- uagGGGCUUUUGGUCgCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 93241 0.66 0.891032
Target:  5'- -gCCCCugcuuGAGGGCCAGgaaacgcccgcggccCGCGCCGgCGCc -3'
miRNA:   3'- uaGGGG-----CUUUUGGUC---------------GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 92283 0.68 0.809966
Target:  5'- uGUCCggCCGAAGGCCuGgaGCuGCUGUCGCu -3'
miRNA:   3'- -UAGG--GGCUUUUGGuCg-CG-UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 91968 0.66 0.9077
Target:  5'- -cCCCCGu---CCGGCGCGauCCgGUgGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGCGU--GG-CAgCG- -5'
5504 5' -56.2 NC_001798.1 + 91500 0.66 0.888331
Target:  5'- -cCCCCGGcucuuACCGGCGgACCcG-CGCc -3'
miRNA:   3'- uaGGGGCUuu---UGGUCGCgUGG-CaGCG- -5'
5504 5' -56.2 NC_001798.1 + 90678 0.69 0.73544
Target:  5'- -cCCCCGgcGACUcGCGCaggGCCGcCGCc -3'
miRNA:   3'- uaGGGGCuuUUGGuCGCG---UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 88805 0.67 0.849248
Target:  5'- -aCUCCGc---CCAGCGCGCgucacguacgcgcgCGUCGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGCGUG--------------GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 86902 0.66 0.891032
Target:  5'- -aCCCCGGcgugGAgcGCCGG-GCcucccgcaagagccuGCCGUCGCa -3'
miRNA:   3'- uaGGGGCU----UU--UGGUCgCG---------------UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 86738 0.7 0.715732
Target:  5'- uGUCCgCG-AGGCCGGCGCGCUGcUCa- -3'
miRNA:   3'- -UAGGgGCuUUUGGUCGCGUGGC-AGcg -5'
5504 5' -56.2 NC_001798.1 + 86071 0.7 0.714738
Target:  5'- -cCCCCGccgucugggagucGGGGCCccggcuGCGCGCCGcCGCg -3'
miRNA:   3'- uaGGGGC-------------UUUUGGu-----CGCGUGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.