miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 85036 0.73 0.514082
Target:  5'- -gCCCCGggGguGCCgucgAGCGcCGCCGUgCGCg -3'
miRNA:   3'- uaGGGGCuuU--UGG----UCGC-GUGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 84878 0.7 0.682624
Target:  5'- uGUCCUCGA--ACCAGacggccgcguccccCGCGCCGucUCGCg -3'
miRNA:   3'- -UAGGGGCUuuUGGUC--------------GCGUGGC--AGCG- -5'
5504 5' -56.2 NC_001798.1 + 84777 0.67 0.846863
Target:  5'- --gCCCGGcguacgucaggagggAGGCCAGcCGCugCGUcCGCg -3'
miRNA:   3'- uagGGGCU---------------UUUGGUC-GCGugGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 84601 0.69 0.782986
Target:  5'- gGUCCCgGu--GCCGGUGCcccGCCGaagCGCg -3'
miRNA:   3'- -UAGGGgCuuuUGGUCGCG---UGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 83899 0.68 0.792126
Target:  5'- -cUCCgGAAGAgUGGUGCGCCGcCGCc -3'
miRNA:   3'- uaGGGgCUUUUgGUCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 82150 0.68 0.827164
Target:  5'- cUCCCCGGGAcCCAGCcgaccaCGCgGcCGCg -3'
miRNA:   3'- uAGGGGCUUUuGGUCGc-----GUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 82064 0.66 0.907088
Target:  5'- -cCCCCGggGccccgcgGCCGGCcCACCccggCGCc -3'
miRNA:   3'- uaGGGGCuuU-------UGGUCGcGUGGca--GCG- -5'
5504 5' -56.2 NC_001798.1 + 82001 0.7 0.685657
Target:  5'- cGUCCCCGggGgcgaccGCCGcCGCGgCCGcCGCc -3'
miRNA:   3'- -UAGGGGCuuU------UGGUcGCGU-GGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 81817 0.73 0.514082
Target:  5'- cUCCCCGcc--CCGGuCGCcCCGUCGCc -3'
miRNA:   3'- uAGGGGCuuuuGGUC-GCGuGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 81191 0.73 0.514082
Target:  5'- uGUUCCCGGGAcacccgguuuACCAGCGCcCCcUCGCc -3'
miRNA:   3'- -UAGGGGCUUU----------UGGUCGCGuGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 80790 0.66 0.895017
Target:  5'- -gCCCCGGcGGGCCGGaCGCcGCCcugCGCg -3'
miRNA:   3'- uaGGGGCU-UUUGGUC-GCG-UGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 79993 0.75 0.421134
Target:  5'- -cCCCCGggGGucCCAGCGCcACugCGUCGCc -3'
miRNA:   3'- uaGGGGCuuUU--GGUCGCG-UG--GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 79737 0.66 0.888331
Target:  5'- -gCCCCGAcggucacGGCCAuguacGUGCugACCGUCGUg -3'
miRNA:   3'- uaGGGGCUu------UUGGU-----CGCG--UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 79468 0.69 0.739342
Target:  5'- -cCCCCGAGGGCCacgaggucgacccgcAGCuGCugCGcCGCc -3'
miRNA:   3'- uaGGGGCUUUUGG---------------UCG-CGugGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 79110 0.66 0.9077
Target:  5'- -gUCCUGGGcGCCaAGgGCGCCGagCGCg -3'
miRNA:   3'- uaGGGGCUUuUGG-UCgCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 78431 0.67 0.866939
Target:  5'- -gCCCCGugaAGAACaCGGCGUACgccgaguaUGUCGCc -3'
miRNA:   3'- uaGGGGC---UUUUG-GUCGCGUG--------GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 78226 0.67 0.843655
Target:  5'- gAUCgCCUGGAcGCCAuccgggccgacGUGCACCGggCGCu -3'
miRNA:   3'- -UAG-GGGCUUuUGGU-----------CGCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 77924 0.79 0.245327
Target:  5'- -cCCCCGAGAACCAGCGCcaccccaugcuccccCCGcUCGCc -3'
miRNA:   3'- uaGGGGCUUUUGGUCGCGu--------------GGC-AGCG- -5'
5504 5' -56.2 NC_001798.1 + 76940 0.67 0.851616
Target:  5'- -cCCCCGGAAgucacGgCGGCGCugCGg-GCg -3'
miRNA:   3'- uaGGGGCUUU-----UgGUCGCGugGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 76615 0.71 0.624546
Target:  5'- uGUCCCCcGAGGCCAcGCGCaugGCCGaagaCGCg -3'
miRNA:   3'- -UAGGGGcUUUUGGU-CGCG---UGGCa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.