miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 104804 0.66 0.881419
Target:  5'- gGUCCCCGAAcgcAACgGGaGCGCgaUCGCg -3'
miRNA:   3'- -UAGGGGCUU---UUGgUCgCGUGgcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4479 0.66 0.881419
Target:  5'- cGUCUCCGGuccgcGGAcCCAGCGgCcCgCGUCGCg -3'
miRNA:   3'- -UAGGGGCU-----UUU-GGUCGC-GuG-GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 99939 0.66 0.881419
Target:  5'- -gCCCCGGAAuGCCA-CGC-CCG-CGCc -3'
miRNA:   3'- uaGGGGCUUU-UGGUcGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 5365 0.66 0.880715
Target:  5'- -gCCCCGAc-GCCcGCGCGuccgcguCCGUgGCg -3'
miRNA:   3'- uaGGGGCUuuUGGuCGCGU-------GGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 148638 0.67 0.874287
Target:  5'- cUCCCCGA--GCCAG-GCGCCcUCcCa -3'
miRNA:   3'- uAGGGGCUuuUGGUCgCGUGGcAGcG- -5'
5504 5' -56.2 NC_001798.1 + 123182 0.66 0.888331
Target:  5'- -gCCUCGcAGACCccgucgcGCGUGCCGUCGg -3'
miRNA:   3'- uaGGGGCuUUUGGu------CGCGUGGCAGCg -5'
5504 5' -56.2 NC_001798.1 + 150796 0.66 0.888331
Target:  5'- -cCCCCGcccgcaaCGGgGCGCCGcCGCu -3'
miRNA:   3'- uaGGGGCuuuug--GUCgCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145414 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 127356 0.66 0.895017
Target:  5'- cGUCCCCGu-GACCcGCGUcCCGg-GCu -3'
miRNA:   3'- -UAGGGGCuuUUGGuCGCGuGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 31683 0.66 0.895017
Target:  5'- -cCCgCCGu--GCCGguggacGCGCACCG-CGCg -3'
miRNA:   3'- uaGG-GGCuuuUGGU------CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25114 0.66 0.895017
Target:  5'- -cCCCCGAAGAagAGcCGCGCgGaCGCc -3'
miRNA:   3'- uaGGGGCUUUUggUC-GCGUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 136197 0.66 0.895017
Target:  5'- uUCCCUGAauuuggucaauAAACCGGgGCcCCGU-GCu -3'
miRNA:   3'- uAGGGGCU-----------UUUGGUCgCGuGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 80790 0.66 0.895017
Target:  5'- -gCCCCGGcGGGCCGGaCGCcGCCcugCGCg -3'
miRNA:   3'- uaGGGGCU-UUUGGUC-GCG-UGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 58859 0.66 0.895017
Target:  5'- -gCCCCGAGcGCCAG-GCACUGg--- -3'
miRNA:   3'- uaGGGGCUUuUGGUCgCGUGGCagcg -5'
5504 5' -56.2 NC_001798.1 + 32054 0.66 0.895017
Target:  5'- -gCCCCGGcguCCGcGgGCGCCG-CGCc -3'
miRNA:   3'- uaGGGGCUuuuGGU-CgCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 3197 0.66 0.895017
Target:  5'- -gCCCCG---GCCGGCGCGgaGgcgggCGCg -3'
miRNA:   3'- uaGGGGCuuuUGGUCGCGUggCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 43039 0.66 0.894359
Target:  5'- -gCCCCGGgcgcaAAugCGGCGCgugagccGCCGgccgagCGCg -3'
miRNA:   3'- uaGGGGCU-----UUugGUCGCG-------UGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 86902 0.66 0.891032
Target:  5'- -aCCCCGGcgugGAgcGCCGG-GCcucccgcaagagccuGCCGUCGCa -3'
miRNA:   3'- uaGGGGCU----UU--UGGUCgCG---------------UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 93241 0.66 0.891032
Target:  5'- -gCCCCugcuuGAGGGCCAGgaaacgcccgcggccCGCGCCGgCGCc -3'
miRNA:   3'- uaGGGG-----CUUUUGGUC---------------GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 72588 0.66 0.888331
Target:  5'- cGUCCCuCGcGGGGCU-GCGguCCGUCGUc -3'
miRNA:   3'- -UAGGG-GC-UUUUGGuCGCguGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.