miRNA display CGI


Results 121 - 140 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 22820 0.67 0.866939
Target:  5'- gAUCUCCGGAuccAGCCGaCGgACCGcCGCc -3'
miRNA:   3'- -UAGGGGCUU---UUGGUcGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 63430 0.67 0.85938
Target:  5'- -cUCCCGAAAcaGCCGguacacGCGCGCCGccUCGg -3'
miRNA:   3'- uaGGGGCUUU--UGGU------CGCGUGGC--AGCg -5'
5504 5' -56.2 NC_001798.1 + 121078 0.66 0.881419
Target:  5'- -gCCCCGAGGAC--GCGCACa--CGCa -3'
miRNA:   3'- uaGGGGCUUUUGguCGCGUGgcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 128314 0.66 0.881419
Target:  5'- -cCCCCGu---CCGcCGCcgaaGCCGUCGCc -3'
miRNA:   3'- uaGGGGCuuuuGGUcGCG----UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 16428 0.66 0.888331
Target:  5'- cGUCUuuGggGACggCGGCuCGCCGcCGCg -3'
miRNA:   3'- -UAGGggCuuUUG--GUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 80790 0.66 0.895017
Target:  5'- -gCCCCGGcGGGCCGGaCGCcGCCcugCGCg -3'
miRNA:   3'- uaGGGGCU-UUUGGUC-GCG-UGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 58859 0.66 0.895017
Target:  5'- -gCCCCGAGcGCCAG-GCACUGg--- -3'
miRNA:   3'- uaGGGGCUUuUGGUCgCGUGGCagcg -5'
5504 5' -56.2 NC_001798.1 + 32054 0.66 0.895017
Target:  5'- -gCCCCGGcguCCGcGgGCGCCG-CGCc -3'
miRNA:   3'- uaGGGGCUuuuGGU-CgCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 3197 0.66 0.895017
Target:  5'- -gCCCCG---GCCGGCGCGgaGgcgggCGCg -3'
miRNA:   3'- uaGGGGCuuuUGGUCGCGUggCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 43039 0.66 0.894359
Target:  5'- -gCCCCGGgcgcaAAugCGGCGCgugagccGCCGgccgagCGCg -3'
miRNA:   3'- uaGGGGCU-----UUugGUCGCG-------UGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 86902 0.66 0.891032
Target:  5'- -aCCCCGGcgugGAgcGCCGG-GCcucccgcaagagccuGCCGUCGCa -3'
miRNA:   3'- uaGGGGCU----UU--UGGUCgCG---------------UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 93241 0.66 0.891032
Target:  5'- -gCCCCugcuuGAGGGCCAGgaaacgcccgcggccCGCGCCGgCGCc -3'
miRNA:   3'- uaGGGG-----CUUUUGGUC---------------GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 72588 0.66 0.888331
Target:  5'- cGUCCCuCGcGGGGCU-GCGguCCGUCGUc -3'
miRNA:   3'- -UAGGG-GC-UUUUGGuCGCguGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 150796 0.66 0.888331
Target:  5'- -cCCCCGcccgcaaCGGgGCGCCGcCGCu -3'
miRNA:   3'- uaGGGGCuuuug--GUCgCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 123182 0.66 0.888331
Target:  5'- -gCCUCGcAGACCccgucgcGCGUGCCGUCGg -3'
miRNA:   3'- uaGGGGCuUUUGGu------CGCGUGGCAGCg -5'
5504 5' -56.2 NC_001798.1 + 109677 0.66 0.888331
Target:  5'- cGUCCuCCGGGcGCCguuccuggcgGGCGCGCCcUCGg -3'
miRNA:   3'- -UAGG-GGCUUuUGG----------UCGCGUGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 104751 0.66 0.888331
Target:  5'- cGUCgCCGAuuaccgcGGCCAGaCGCGCCaGguagCGCg -3'
miRNA:   3'- -UAGgGGCUu------UUGGUC-GCGUGG-Ca---GCG- -5'
5504 5' -56.2 NC_001798.1 + 91500 0.66 0.888331
Target:  5'- -cCCCCGGcucuuACCGGCGgACCcG-CGCc -3'
miRNA:   3'- uaGGGGCUuu---UGGUCGCgUGG-CaGCG- -5'
5504 5' -56.2 NC_001798.1 + 79737 0.66 0.888331
Target:  5'- -gCCCCGAcggucacGGCCAuguacGUGCugACCGUCGUg -3'
miRNA:   3'- uaGGGGCUu------UUGGU-----CGCG--UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 23335 0.66 0.888331
Target:  5'- -aCCaCCGcc-GCCGGCGCGCCcccCGCc -3'
miRNA:   3'- uaGG-GGCuuuUGGUCGCGUGGca-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.