Results 101 - 120 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 104804 | 0.66 | 0.881419 |
Target: 5'- gGUCCCCGAAcgcAACgGGaGCGCgaUCGCg -3' miRNA: 3'- -UAGGGGCUU---UUGgUCgCGUGgcAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 4479 | 0.66 | 0.881419 |
Target: 5'- cGUCUCCGGuccgcGGAcCCAGCGgCcCgCGUCGCg -3' miRNA: 3'- -UAGGGGCU-----UUU-GGUCGC-GuG-GCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 99939 | 0.66 | 0.881419 |
Target: 5'- -gCCCCGGAAuGCCA-CGC-CCG-CGCc -3' miRNA: 3'- uaGGGGCUUU-UGGUcGCGuGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 5365 | 0.66 | 0.880715 |
Target: 5'- -gCCCCGAc-GCCcGCGCGuccgcguCCGUgGCg -3' miRNA: 3'- uaGGGGCUuuUGGuCGCGU-------GGCAgCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 148638 | 0.67 | 0.874287 |
Target: 5'- cUCCCCGA--GCCAG-GCGCCcUCcCa -3' miRNA: 3'- uAGGGGCUuuUGGUCgCGUGGcAGcG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 123182 | 0.66 | 0.888331 |
Target: 5'- -gCCUCGcAGACCccgucgcGCGUGCCGUCGg -3' miRNA: 3'- uaGGGGCuUUUGGu------CGCGUGGCAGCg -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 150796 | 0.66 | 0.888331 |
Target: 5'- -cCCCCGcccgcaaCGGgGCGCCGcCGCu -3' miRNA: 3'- uaGGGGCuuuug--GUCgCGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 145414 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 127356 | 0.66 | 0.895017 |
Target: 5'- cGUCCCCGu-GACCcGCGUcCCGg-GCu -3' miRNA: 3'- -UAGGGGCuuUUGGuCGCGuGGCagCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 31683 | 0.66 | 0.895017 |
Target: 5'- -cCCgCCGu--GCCGguggacGCGCACCG-CGCg -3' miRNA: 3'- uaGG-GGCuuuUGGU------CGCGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 25114 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGAAGAagAGcCGCGCgGaCGCc -3' miRNA: 3'- uaGGGGCUUUUggUC-GCGUGgCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 136197 | 0.66 | 0.895017 |
Target: 5'- uUCCCUGAauuuggucaauAAACCGGgGCcCCGU-GCu -3' miRNA: 3'- uAGGGGCU-----------UUUGGUCgCGuGGCAgCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 80790 | 0.66 | 0.895017 |
Target: 5'- -gCCCCGGcGGGCCGGaCGCcGCCcugCGCg -3' miRNA: 3'- uaGGGGCU-UUUGGUC-GCG-UGGca-GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 58859 | 0.66 | 0.895017 |
Target: 5'- -gCCCCGAGcGCCAG-GCACUGg--- -3' miRNA: 3'- uaGGGGCUUuUGGUCgCGUGGCagcg -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 32054 | 0.66 | 0.895017 |
Target: 5'- -gCCCCGGcguCCGcGgGCGCCG-CGCc -3' miRNA: 3'- uaGGGGCUuuuGGU-CgCGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 3197 | 0.66 | 0.895017 |
Target: 5'- -gCCCCG---GCCGGCGCGgaGgcgggCGCg -3' miRNA: 3'- uaGGGGCuuuUGGUCGCGUggCa----GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 43039 | 0.66 | 0.894359 |
Target: 5'- -gCCCCGGgcgcaAAugCGGCGCgugagccGCCGgccgagCGCg -3' miRNA: 3'- uaGGGGCU-----UUugGUCGCG-------UGGCa-----GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 86902 | 0.66 | 0.891032 |
Target: 5'- -aCCCCGGcgugGAgcGCCGG-GCcucccgcaagagccuGCCGUCGCa -3' miRNA: 3'- uaGGGGCU----UU--UGGUCgCG---------------UGGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 93241 | 0.66 | 0.891032 |
Target: 5'- -gCCCCugcuuGAGGGCCAGgaaacgcccgcggccCGCGCCGgCGCc -3' miRNA: 3'- uaGGGG-----CUUUUGGUC---------------GCGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 72588 | 0.66 | 0.888331 |
Target: 5'- cGUCCCuCGcGGGGCU-GCGguCCGUCGUc -3' miRNA: 3'- -UAGGG-GC-UUUUGGuCGCguGGCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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