miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 77924 0.79 0.245327
Target:  5'- -cCCCCGAGAACCAGCGCcaccccaugcuccccCCGcUCGCc -3'
miRNA:   3'- uaGGGGCUUUUGGUCGCGu--------------GGC-AGCG- -5'
5504 5' -56.2 NC_001798.1 + 6997 0.78 0.295688
Target:  5'- -cCCCCacccAACCAGCGCGCCGgCGCu -3'
miRNA:   3'- uaGGGGcuu-UUGGUCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 1460 0.78 0.30965
Target:  5'- cGUCCUCGcaGAAGuCCGGCGCGCCGggCGCc -3'
miRNA:   3'- -UAGGGGC--UUUU-GGUCGCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 132070 0.77 0.34673
Target:  5'- cAUgCCCGGAuuuUCGGCGCGCCGUUGUc -3'
miRNA:   3'- -UAgGGGCUUuu-GGUCGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 300 0.76 0.386882
Target:  5'- -cCCCCGAAGacGCCAGuCGCACCaccgcUCGCc -3'
miRNA:   3'- uaGGGGCUUU--UGGUC-GCGUGGc----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 79993 0.75 0.421134
Target:  5'- -cCCCCGggGGucCCAGCGCcACugCGUCGCc -3'
miRNA:   3'- uaGGGGCuuUU--GGUCGCG-UG--GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 110036 0.75 0.429979
Target:  5'- cGUCCCgGAGGccacccACCAGUGUAgcggcCCGUCGCa -3'
miRNA:   3'- -UAGGGgCUUU------UGGUCGCGU-----GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 98764 0.75 0.429979
Target:  5'- -cCCCCGAc-GCCAaCGCgACCGUCGCc -3'
miRNA:   3'- uaGGGGCUuuUGGUcGCG-UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 47858 0.75 0.44799
Target:  5'- -cCCCCGggGGCCccguGgGCGCCGgcgggCGCu -3'
miRNA:   3'- uaGGGGCuuUUGGu---CgCGUGGCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 102191 0.75 0.44799
Target:  5'- --gCCCGGAAGCCuGGCGCGCgG-CGCg -3'
miRNA:   3'- uagGGGCUUUUGG-UCGCGUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 3841 0.75 0.44799
Target:  5'- -cCCCCaGAGGCCGGgGCGgCUGUCGCc -3'
miRNA:   3'- uaGGGGcUUUUGGUCgCGU-GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 20497 0.74 0.472952
Target:  5'- gAUCCCCgGAAGACUGGCcggggccugggguuGCGCCG-CGCg -3'
miRNA:   3'- -UAGGGG-CUUUUGGUCG--------------CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 62442 0.74 0.475769
Target:  5'- -cCCCCGGAcgucGCCGGUGgGCCG-CGCg -3'
miRNA:   3'- uaGGGGCUUu---UGGUCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 4581 0.74 0.482374
Target:  5'- gGUCCgCGGcggagaaggcgagcGGGCCGcuucuucuuGCGCGCCGUCGCg -3'
miRNA:   3'- -UAGGgGCU--------------UUUGGU---------CGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 152992 0.74 0.485219
Target:  5'- --aCCgGGAAGCCGGCGCgggGCgGUCGCc -3'
miRNA:   3'- uagGGgCUUUUGGUCGCG---UGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 53183 0.74 0.485219
Target:  5'- cGUCCCCGAG---CGGCGCAUCuUCGCc -3'
miRNA:   3'- -UAGGGGCUUuugGUCGCGUGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 1742 0.74 0.494757
Target:  5'- gGUCCCgCGccgccGGCCAGCGCACgG-CGCa -3'
miRNA:   3'- -UAGGG-GCuu---UUGGUCGCGUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 9646 0.74 0.504379
Target:  5'- -gCCCCG-AGGCgCAGCGgGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuUUUG-GUCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 81817 0.73 0.514082
Target:  5'- cUCCCCGcc--CCGGuCGCcCCGUCGCc -3'
miRNA:   3'- uAGGGGCuuuuGGUC-GCGuGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 81191 0.73 0.514082
Target:  5'- uGUUCCCGGGAcacccgguuuACCAGCGCcCCcUCGCc -3'
miRNA:   3'- -UAGGGGCUUU----------UGGUCGCGuGGcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.