Results 1 - 20 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 127 | 0.67 | 0.851616 |
Target: 5'- cUCCCCcGGAGCCGGCcGCuCCccCGCg -3' miRNA: 3'- uAGGGGcUUUUGGUCG-CGuGGcaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 300 | 0.76 | 0.386882 |
Target: 5'- -cCCCCGAAGacGCCAGuCGCACCaccgcUCGCc -3' miRNA: 3'- uaGGGGCUUU--UGGUC-GCGUGGc----AGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 1212 | 0.66 | 0.901474 |
Target: 5'- cGUCCCCGcgcGGCCcGCG-GCCGaCGCc -3' miRNA: 3'- -UAGGGGCuu-UUGGuCGCgUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 1356 | 0.7 | 0.675532 |
Target: 5'- cUCCgCCGG--GCCGccGCGCACggCGUCGCg -3' miRNA: 3'- uAGG-GGCUuuUGGU--CGCGUG--GCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 1460 | 0.78 | 0.30965 |
Target: 5'- cGUCCUCGcaGAAGuCCGGCGCGCCGggCGCc -3' miRNA: 3'- -UAGGGGC--UUUU-GGUCGCGUGGCa-GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 1526 | 0.69 | 0.745165 |
Target: 5'- cGUCCagcgCCGGGAGCaCGGCGCGgCGguacUCGCg -3' miRNA: 3'- -UAGG----GGCUUUUG-GUCGCGUgGC----AGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 1742 | 0.74 | 0.494757 |
Target: 5'- gGUCCCgCGccgccGGCCAGCGCACgG-CGCa -3' miRNA: 3'- -UAGGG-GCuu---UUGGUCGCGUGgCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 2437 | 0.68 | 0.792126 |
Target: 5'- -gCCCCGGcgGCUGGCGgCGCCaGcCGCc -3' miRNA: 3'- uaGGGGCUuuUGGUCGC-GUGG-CaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 2893 | 0.71 | 0.634764 |
Target: 5'- gGUCCCCGcgcaggcgcaucAGcACCAGCGCGUCG-CGCa -3' miRNA: 3'- -UAGGGGC------------UUuUGGUCGCGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 3197 | 0.66 | 0.895017 |
Target: 5'- -gCCCCG---GCCGGCGCGgaGgcgggCGCg -3' miRNA: 3'- uaGGGGCuuuUGGUCGCGUggCa----GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 3252 | 0.71 | 0.665372 |
Target: 5'- -cCCCCGcggcgccguAGCCGGCggGCACCG-CGCg -3' miRNA: 3'- uaGGGGCuu-------UUGGUCG--CGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 3285 | 0.68 | 0.809966 |
Target: 5'- --gCUCGucGGCCGGCGaCGCCGcCGCc -3' miRNA: 3'- uagGGGCuuUUGGUCGC-GUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 3663 | 0.7 | 0.729562 |
Target: 5'- cGUCCCCGGGcGCCAcGCGCGgguucuggagccaccCCaUCGCc -3' miRNA: 3'- -UAGGGGCUUuUGGU-CGCGU---------------GGcAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 3841 | 0.75 | 0.44799 |
Target: 5'- -cCCCCaGAGGCCGGgGCGgCUGUCGCc -3' miRNA: 3'- uaGGGGcUUUUGGUCgCGU-GGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 4114 | 0.68 | 0.809089 |
Target: 5'- -gCCCUGGGcgggcucGGCCGGgGCGCCGcccccggggcccUCGCg -3' miRNA: 3'- uaGGGGCUU-------UUGGUCgCGUGGC------------AGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 4479 | 0.66 | 0.881419 |
Target: 5'- cGUCUCCGGuccgcGGAcCCAGCGgCcCgCGUCGCg -3' miRNA: 3'- -UAGGGGCU-----UUU-GGUCGC-GuG-GCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 4581 | 0.74 | 0.482374 |
Target: 5'- gGUCCgCGGcggagaaggcgagcGGGCCGcuucuucuuGCGCGCCGUCGCg -3' miRNA: 3'- -UAGGgGCU--------------UUUGGU---------CGCGUGGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 4740 | 0.71 | 0.624546 |
Target: 5'- cUCCCCGGAcGCCGGgGCcGCC-UCGUc -3' miRNA: 3'- uAGGGGCUUuUGGUCgCG-UGGcAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 4975 | 0.68 | 0.81865 |
Target: 5'- -gCCCCGcgGcCCuGCGCGUCGUCGUc -3' miRNA: 3'- uaGGGGCuuUuGGuCGCGUGGCAGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 5365 | 0.66 | 0.880715 |
Target: 5'- -gCCCCGAc-GCCcGCGCGuccgcguCCGUgGCg -3' miRNA: 3'- uaGGGGCUuuUGGuCGCGU-------GGCAgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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