miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 127 0.67 0.851616
Target:  5'- cUCCCCcGGAGCCGGCcGCuCCccCGCg -3'
miRNA:   3'- uAGGGGcUUUUGGUCG-CGuGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 300 0.76 0.386882
Target:  5'- -cCCCCGAAGacGCCAGuCGCACCaccgcUCGCc -3'
miRNA:   3'- uaGGGGCUUU--UGGUC-GCGUGGc----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 1212 0.66 0.901474
Target:  5'- cGUCCCCGcgcGGCCcGCG-GCCGaCGCc -3'
miRNA:   3'- -UAGGGGCuu-UUGGuCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 1356 0.7 0.675532
Target:  5'- cUCCgCCGG--GCCGccGCGCACggCGUCGCg -3'
miRNA:   3'- uAGG-GGCUuuUGGU--CGCGUG--GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 1460 0.78 0.30965
Target:  5'- cGUCCUCGcaGAAGuCCGGCGCGCCGggCGCc -3'
miRNA:   3'- -UAGGGGC--UUUU-GGUCGCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 1526 0.69 0.745165
Target:  5'- cGUCCagcgCCGGGAGCaCGGCGCGgCGguacUCGCg -3'
miRNA:   3'- -UAGG----GGCUUUUG-GUCGCGUgGC----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 1742 0.74 0.494757
Target:  5'- gGUCCCgCGccgccGGCCAGCGCACgG-CGCa -3'
miRNA:   3'- -UAGGG-GCuu---UUGGUCGCGUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 2437 0.68 0.792126
Target:  5'- -gCCCCGGcgGCUGGCGgCGCCaGcCGCc -3'
miRNA:   3'- uaGGGGCUuuUGGUCGC-GUGG-CaGCG- -5'
5504 5' -56.2 NC_001798.1 + 2893 0.71 0.634764
Target:  5'- gGUCCCCGcgcaggcgcaucAGcACCAGCGCGUCG-CGCa -3'
miRNA:   3'- -UAGGGGC------------UUuUGGUCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 3197 0.66 0.895017
Target:  5'- -gCCCCG---GCCGGCGCGgaGgcgggCGCg -3'
miRNA:   3'- uaGGGGCuuuUGGUCGCGUggCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 3252 0.71 0.665372
Target:  5'- -cCCCCGcggcgccguAGCCGGCggGCACCG-CGCg -3'
miRNA:   3'- uaGGGGCuu-------UUGGUCG--CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 3285 0.68 0.809966
Target:  5'- --gCUCGucGGCCGGCGaCGCCGcCGCc -3'
miRNA:   3'- uagGGGCuuUUGGUCGC-GUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 3663 0.7 0.729562
Target:  5'- cGUCCCCGGGcGCCAcGCGCGgguucuggagccaccCCaUCGCc -3'
miRNA:   3'- -UAGGGGCUUuUGGU-CGCGU---------------GGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 3841 0.75 0.44799
Target:  5'- -cCCCCaGAGGCCGGgGCGgCUGUCGCc -3'
miRNA:   3'- uaGGGGcUUUUGGUCgCGU-GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4114 0.68 0.809089
Target:  5'- -gCCCUGGGcgggcucGGCCGGgGCGCCGcccccggggcccUCGCg -3'
miRNA:   3'- uaGGGGCUU-------UUGGUCgCGUGGC------------AGCG- -5'
5504 5' -56.2 NC_001798.1 + 4479 0.66 0.881419
Target:  5'- cGUCUCCGGuccgcGGAcCCAGCGgCcCgCGUCGCg -3'
miRNA:   3'- -UAGGGGCU-----UUU-GGUCGC-GuG-GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4581 0.74 0.482374
Target:  5'- gGUCCgCGGcggagaaggcgagcGGGCCGcuucuucuuGCGCGCCGUCGCg -3'
miRNA:   3'- -UAGGgGCU--------------UUUGGU---------CGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4740 0.71 0.624546
Target:  5'- cUCCCCGGAcGCCGGgGCcGCC-UCGUc -3'
miRNA:   3'- uAGGGGCUUuUGGUCgCG-UGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4975 0.68 0.81865
Target:  5'- -gCCCCGcgGcCCuGCGCGUCGUCGUc -3'
miRNA:   3'- uaGGGGCuuUuGGuCGCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 5365 0.66 0.880715
Target:  5'- -gCCCCGAc-GCCcGCGCGuccgcguCCGUgGCg -3'
miRNA:   3'- uaGGGGCUuuUGGuCGCGU-------GGCAgCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.