Results 21 - 40 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5504 | 5' | -56.2 | NC_001798.1 | + | 82064 | 0.66 | 0.907088 |
Target: 5'- -cCCCCGggGccccgcgGCCGGCcCACCccggCGCc -3' miRNA: 3'- uaGGGGCuuU-------UGGUCGcGUGGca--GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 124097 | 0.66 | 0.903993 |
Target: 5'- -gCCCCGAcGgcccacaucgauuccGCCAaCGCGCUGUgGCg -3' miRNA: 3'- uaGGGGCUuU---------------UGGUcGCGUGGCAgCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 51156 | 0.66 | 0.901474 |
Target: 5'- -aCCCCGGGucCCGacGCGCGuCCGagGCc -3' miRNA: 3'- uaGGGGCUUuuGGU--CGCGU-GGCagCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 1212 | 0.66 | 0.901474 |
Target: 5'- cGUCCCCGcgcGGCCcGCG-GCCGaCGCc -3' miRNA: 3'- -UAGGGGCuu-UUGGuCGCgUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 32370 | 0.66 | 0.901474 |
Target: 5'- -gCCCCGAGcccggggcccgcGAcCCGGCGC-CCGgccucaCGCg -3' miRNA: 3'- uaGGGGCUU------------UU-GGUCGCGuGGCa-----GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 25114 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGAAGAagAGcCGCGCgGaCGCc -3' miRNA: 3'- uaGGGGCUUUUggUC-GCGUGgCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 136197 | 0.66 | 0.895017 |
Target: 5'- uUCCCUGAauuuggucaauAAACCGGgGCcCCGU-GCu -3' miRNA: 3'- uAGGGGCU-----------UUUGGUCgCGuGGCAgCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 80790 | 0.66 | 0.895017 |
Target: 5'- -gCCCCGGcGGGCCGGaCGCcGCCcugCGCg -3' miRNA: 3'- uaGGGGCU-UUUGGUC-GCG-UGGca-GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 58859 | 0.66 | 0.895017 |
Target: 5'- -gCCCCGAGcGCCAG-GCACUGg--- -3' miRNA: 3'- uaGGGGCUUuUGGUCgCGUGGCagcg -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 32054 | 0.66 | 0.895017 |
Target: 5'- -gCCCCGGcguCCGcGgGCGCCG-CGCc -3' miRNA: 3'- uaGGGGCUuuuGGU-CgCGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 3197 | 0.66 | 0.895017 |
Target: 5'- -gCCCCG---GCCGGCGCGgaGgcgggCGCg -3' miRNA: 3'- uaGGGGCuuuUGGUCGCGUggCa----GCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 31683 | 0.66 | 0.895017 |
Target: 5'- -cCCgCCGu--GCCGguggacGCGCACCG-CGCg -3' miRNA: 3'- uaGG-GGCuuuUGGU------CGCGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 127356 | 0.66 | 0.895017 |
Target: 5'- cGUCCCCGu-GACCcGCGUcCCGg-GCu -3' miRNA: 3'- -UAGGGGCuuUUGGuCGCGuGGCagCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 145414 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 145435 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 145456 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 145477 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 145498 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 145519 | 0.66 | 0.895017 |
Target: 5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3' miRNA: 3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' |
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5504 | 5' | -56.2 | NC_001798.1 | + | 154030 | 0.66 | 0.895017 |
Target: 5'- aGUCUgCGGuuGggAGCGCGCCGgggCGCg -3' miRNA: 3'- -UAGGgGCUuuUggUCGCGUGGCa--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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