Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 28165 | 0.73 | 0.495261 |
Target: 5'- -aCGCAGAgugggcgaacagCCCCCCGAGCgagGGCGgGg -3' miRNA: 3'- aaGCGUCUa-----------GGGGGGUUUGa--CCGUgU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 152624 | 0.72 | 0.516916 |
Target: 5'- -aCGCAGAugggagUCCCCCCGGcgccccGCcGGCGCGg -3' miRNA: 3'- aaGCGUCU------AGGGGGGUU------UGaCCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 2888 | 0.71 | 0.567413 |
Target: 5'- -gCGCAGGUCCCCgC--GCaGGCGCAu -3' miRNA: 3'- aaGCGUCUAGGGGgGuuUGaCCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 75240 | 0.71 | 0.587984 |
Target: 5'- gUUCG-AGGUCCaCCCCAAugUGGC-CGc -3' miRNA: 3'- -AAGCgUCUAGG-GGGGUUugACCGuGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 122390 | 0.71 | 0.608686 |
Target: 5'- -cCGCGGcugUCCUCCGAGCUGGcCACGg -3' miRNA: 3'- aaGCGUCua-GGGGGGUUUGACC-GUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 39357 | 0.7 | 0.639855 |
Target: 5'- aUCGCAGAaCCgCCCGAAC-GGCGgGg -3' miRNA: 3'- aAGCGUCUaGGgGGGUUUGaCCGUgU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 53176 | 0.7 | 0.670966 |
Target: 5'- -aCGCGGGcgUCCCCGAGC-GGCGCAu -3' miRNA: 3'- aaGCGUCUagGGGGGUUUGaCCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 28278 | 0.69 | 0.679223 |
Target: 5'- -cCGCAGcgCCCCCUuccgccccacCUGGCGCu -3' miRNA: 3'- aaGCGUCuaGGGGGGuuu-------GACCGUGu -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 31867 | 0.69 | 0.733051 |
Target: 5'- -cCGCGGAgggggcggcggcccgCCCCCgGAAgaGGCGCGg -3' miRNA: 3'- aaGCGUCUa--------------GGGGGgUUUgaCCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 71421 | 0.68 | 0.751805 |
Target: 5'- -gCGCGGAcgCCCCCCGGccACgGGCuCAg -3' miRNA: 3'- aaGCGUCUa-GGGGGGUU--UGaCCGuGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 27205 | 0.68 | 0.771121 |
Target: 5'- --gGCGGGggaagCCCCCgGGGCggGGCGCGg -3' miRNA: 3'- aagCGUCUa----GGGGGgUUUGa-CCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 48834 | 0.68 | 0.771121 |
Target: 5'- gUCGCGGGucccggaucccUCCCCCCcucuccgccgccGGGCgcucgGGCACGu -3' miRNA: 3'- aAGCGUCU-----------AGGGGGG------------UUUGa----CCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 129344 | 0.67 | 0.799113 |
Target: 5'- -cCGCGGAgcgCCCgCCGGGcCUGGCGgGg -3' miRNA: 3'- aaGCGUCUa--GGGgGGUUU-GACCGUgU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 52621 | 0.67 | 0.808144 |
Target: 5'- --gGCGGGUCgacggCCCCCGAGgUgGGCACGu -3' miRNA: 3'- aagCGUCUAG-----GGGGGUUUgA-CCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 136629 | 0.67 | 0.817011 |
Target: 5'- -aCGCAGAgCUCUgCGGGgUGGCGCAa -3' miRNA: 3'- aaGCGUCUaGGGGgGUUUgACCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 151192 | 0.67 | 0.824843 |
Target: 5'- -gCGCGGAccgugugUCCCCCCAgcGACaggGaGCGCGg -3' miRNA: 3'- aaGCGUCU-------AGGGGGGU--UUGa--C-CGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 75201 | 0.67 | 0.825704 |
Target: 5'- -cCGCcccccGGAgCCCCCCGGcgccgacCUGGCGCAg -3' miRNA: 3'- aaGCG-----UCUaGGGGGGUUu------GACCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 76427 | 0.67 | 0.825704 |
Target: 5'- -aCGCAag-CCCCUggaaGAGCUGGCGCGc -3' miRNA: 3'- aaGCGUcuaGGGGGg---UUUGACCGUGU- -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 108053 | 0.67 | 0.834216 |
Target: 5'- -cCGUGGGUacggacacccCCCCCCAucugcgGACUGGCAg- -3' miRNA: 3'- aaGCGUCUA----------GGGGGGU------UUGACCGUgu -5' |
|||||||
5505 | 5' | -56.3 | NC_001798.1 | + | 133585 | 0.67 | 0.834216 |
Target: 5'- -aCGCAGAcgUUUCCCgGGGCggGGCGCGu -3' miRNA: 3'- aaGCGUCU--AGGGGGgUUUGa-CCGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home