miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5507 3' -55.4 NC_001798.1 + 32049 0.77 0.376317
Target:  5'- cGCUCGCCccGGCGUccGCGGgcgccgcgCCCCCGUc -3'
miRNA:   3'- -CGAGCGGuaUCGUA--UGUCa-------GGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 96162 0.75 0.464541
Target:  5'- aCUCGCCAUGGCGgccgcgCCCCCGg -3'
miRNA:   3'- cGAGCGGUAUCGUaugucaGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 149558 0.73 0.562386
Target:  5'- --aUGuCCAggacgGGCAgGCAGUCCCCCGUg -3'
miRNA:   3'- cgaGC-GGUa----UCGUaUGUCAGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 19322 0.71 0.68537
Target:  5'- cUUCGCU--GGC-UACGGUCCCUCGUg -3'
miRNA:   3'- cGAGCGGuaUCGuAUGUCAGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 439 0.71 0.695532
Target:  5'- cGCgCGCCAcggGGC-UGCGGUCCCgCGg -3'
miRNA:   3'- -CGaGCGGUa--UCGuAUGUCAGGGgGCa -5'
5507 3' -55.4 NC_001798.1 + 84710 0.71 0.705639
Target:  5'- aGCUCGCCGUGcacGCAcGCGGUgUCCUGc -3'
miRNA:   3'- -CGAGCGGUAU---CGUaUGUCAgGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 51135 0.71 0.705639
Target:  5'- -gUCGCCGggaGGCccGCGGUCaCCCCGg -3'
miRNA:   3'- cgAGCGGUa--UCGuaUGUCAG-GGGGCa -5'
5507 3' -55.4 NC_001798.1 + 81720 0.7 0.715684
Target:  5'- cGC-CGCCGUGccgcGCGUGCgcaGGUCCCgCCGg -3'
miRNA:   3'- -CGaGCGGUAU----CGUAUG---UCAGGG-GGCa -5'
5507 3' -55.4 NC_001798.1 + 46368 0.7 0.735547
Target:  5'- aGCUCGCCc--GCGUAgacCAGcgaUCCCCCGc -3'
miRNA:   3'- -CGAGCGGuauCGUAU---GUC---AGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 7486 0.7 0.764635
Target:  5'- gGCUUGCC-UAGCc--CGGUCCCCUa- -3'
miRNA:   3'- -CGAGCGGuAUCGuauGUCAGGGGGca -5'
5507 3' -55.4 NC_001798.1 + 76584 0.69 0.792652
Target:  5'- gGCcccgCGCCGUacgucgacgggGGCGgGCuGUCCCCCGa -3'
miRNA:   3'- -CGa---GCGGUA-----------UCGUaUGuCAGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 87717 0.68 0.827917
Target:  5'- cCUcCGCCGUAGCGc-CGG-CCCCCGc -3'
miRNA:   3'- cGA-GCGGUAUCGUauGUCaGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 133938 0.68 0.836303
Target:  5'- --gCGUCGUGGCAUGgaAG-CCCCCGg -3'
miRNA:   3'- cgaGCGGUAUCGUAUg-UCaGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 10543 0.68 0.852504
Target:  5'- cGCgaucgCGCCAc-GCcaacuccgaAUACAGUCCCUCGUc -3'
miRNA:   3'- -CGa----GCGGUauCG---------UAUGUCAGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 363 0.68 0.852504
Target:  5'- cGCcCGCCc--GCAcACGGUUCCCCGc -3'
miRNA:   3'- -CGaGCGGuauCGUaUGUCAGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 79691 0.68 0.860305
Target:  5'- gGCg-GCCu--GCGUGCGG-CCCCCGc -3'
miRNA:   3'- -CGagCGGuauCGUAUGUCaGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 124136 0.68 0.860305
Target:  5'- cGCgccccCGCCGUGGCGgaggccugucccUGC-GUCgCCCCGUg -3'
miRNA:   3'- -CGa----GCGGUAUCGU------------AUGuCAG-GGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 128042 0.67 0.867147
Target:  5'- --aCGCCAUcgacccggacugcAGCcc-CGGUCCCCCGg -3'
miRNA:   3'- cgaGCGGUA-------------UCGuauGUCAGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 100849 0.67 0.867897
Target:  5'- cGCUUGCCGUGGgGcUGCuGGUCCUggCCGg -3'
miRNA:   3'- -CGAGCGGUAUCgU-AUG-UCAGGG--GGCa -5'
5507 3' -55.4 NC_001798.1 + 72348 0.67 0.867897
Target:  5'- aGCUCGCCG-AGCGcGCcGaCCCCCu- -3'
miRNA:   3'- -CGAGCGGUaUCGUaUGuCaGGGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.