miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5507 5' -50.8 NC_001798.1 + 50576 0.76 0.748282
Target:  5'- gGugGGGGGugUGUGccgUUGG-GUUGGg -3'
miRNA:   3'- gCugCUCCCugACAUa--AGCCuCAACC- -5'
5507 5' -50.8 NC_001798.1 + 4846 0.74 0.831285
Target:  5'- gCGGCGGGGcGACgGUccggGUUCGGGGU-GGg -3'
miRNA:   3'- -GCUGCUCC-CUGaCA----UAAGCCUCAaCC- -5'
5507 5' -50.8 NC_001798.1 + 26620 0.72 0.892648
Target:  5'- aCGACGAcGGACUGUuUggGGAGUgacgGGg -3'
miRNA:   3'- -GCUGCUcCCUGACAuAagCCUCAa---CC- -5'
5507 5' -50.8 NC_001798.1 + 57526 0.71 0.923527
Target:  5'- gGGCGuGGGugUG-GUUCGGGGggcGGa -3'
miRNA:   3'- gCUGCuCCCugACaUAAGCCUCaa-CC- -5'
5507 5' -50.8 NC_001798.1 + 68134 0.71 0.928434
Target:  5'- aCGGCGAGGGcggaguuGgUGUGUagGGGGggGGa -3'
miRNA:   3'- -GCUGCUCCC-------UgACAUAagCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 10307 0.71 0.939104
Target:  5'- aCGACGGGGGGggGg--UUGGGGggGGa -3'
miRNA:   3'- -GCUGCUCCCUgaCauaAGCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 56181 0.71 0.943804
Target:  5'- aCGGCGGGGGGgUGggg-UGGGGUgUGGu -3'
miRNA:   3'- -GCUGCUCCCUgACauaaGCCUCA-ACC- -5'
5507 5' -50.8 NC_001798.1 + 43648 0.7 0.952477
Target:  5'- gGGCGAGGGcugcuccguGCUGgccgCGGGGcUGGg -3'
miRNA:   3'- gCUGCUCCC---------UGACauaaGCCUCaACC- -5'
5507 5' -50.8 NC_001798.1 + 11687 0.69 0.967013
Target:  5'- gGACGGGGGugUcGUuguccgUGGAGgggUGGg -3'
miRNA:   3'- gCUGCUCCCugA-CAuaa---GCCUCa--ACC- -5'
5507 5' -50.8 NC_001798.1 + 15070 0.69 0.97009
Target:  5'- -cGCGGGGGGugguUUGUugggGUUCGGAGUUcGGa -3'
miRNA:   3'- gcUGCUCCCU----GACA----UAAGCCUCAA-CC- -5'
5507 5' -50.8 NC_001798.1 + 63245 0.69 0.972956
Target:  5'- aGGCuGAGGGgaaaGCUGgcgUCGGGGgcGGg -3'
miRNA:   3'- gCUG-CUCCC----UGACauaAGCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 68489 0.69 0.972956
Target:  5'- aCGGCGAGcGGAaaGUcaacguuucgGUUCGGGGgaGGg -3'
miRNA:   3'- -GCUGCUC-CCUgaCA----------UAAGCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 111822 0.69 0.972956
Target:  5'- gGGCGuccAGGGGCUGgcg-CGGGGcgGGa -3'
miRNA:   3'- gCUGC---UCCCUGACauaaGCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 108853 0.69 0.975618
Target:  5'- aCGACGGGcGGGCUGgcGUUCGG-GUg-- -3'
miRNA:   3'- -GCUGCUC-CCUGACa-UAAGCCuCAacc -5'
5507 5' -50.8 NC_001798.1 + 55998 0.69 0.975618
Target:  5'- gGGCGAGGGGCUgGUAggCGGGu---- -3'
miRNA:   3'- gCUGCUCCCUGA-CAUaaGCCUcaacc -5'
5507 5' -50.8 NC_001798.1 + 30949 0.68 0.984377
Target:  5'- gGGCGGGGGGCgGg---CGGGGgucGGg -3'
miRNA:   3'- gCUGCUCCCUGaCauaaGCCUCaa-CC- -5'
5507 5' -50.8 NC_001798.1 + 112837 0.67 0.989192
Target:  5'- gGGCGuGGGugUGaauUUCGGGGguuccGGg -3'
miRNA:   3'- gCUGCuCCCugACau-AAGCCUCaa---CC- -5'
5507 5' -50.8 NC_001798.1 + 34159 0.67 0.990509
Target:  5'- aCGACGGGGGGggGggaaaCGGGGgUGGg -3'
miRNA:   3'- -GCUGCUCCCUgaCauaa-GCCUCaACC- -5'
5507 5' -50.8 NC_001798.1 + 105722 0.67 0.991697
Target:  5'- uCGACacccAGGGGCUGUugUCGGG--UGGg -3'
miRNA:   3'- -GCUGc---UCCCUGACAuaAGCCUcaACC- -5'
5507 5' -50.8 NC_001798.1 + 100996 0.67 0.992764
Target:  5'- gCGGgGAGGGGgaGgaaggcgCGGAGggGGg -3'
miRNA:   3'- -GCUgCUCCCUgaCauaa---GCCUCaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.