Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5508 | 3' | -55.1 | NC_001798.1 | + | 117022 | 0.68 | 0.826462 |
Target: 5'- cUGGuccccccGGCCCUGGGGGCCAacuacUUCUc--- -3' miRNA: 3'- -ACCu------CUGGGACCUCCGGU-----AAGAcaaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 134212 | 0.69 | 0.761833 |
Target: 5'- cUGGAGcCCCUGGGGGaCCcgaccCUGUg- -3' miRNA: 3'- -ACCUCuGGGACCUCC-GGuaa--GACAaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 12590 | 0.7 | 0.721028 |
Target: 5'- gGGAGACguaggcgCUUGGGGGCCAU-CUGa-- -3' miRNA: 3'- aCCUCUG-------GGACCUCCGGUAaGACaaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 144546 | 0.7 | 0.691315 |
Target: 5'- gGGAGACCCgccgugGGGGGgCGUUCg---- -3' miRNA: 3'- aCCUCUGGGa-----CCUCCgGUAAGacaaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 18255 | 0.7 | 0.691315 |
Target: 5'- cGGGGGCCC-GGGGGCCAg---GUa- -3' miRNA: 3'- aCCUCUGGGaCCUCCGGUaagaCAaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 135301 | 0.72 | 0.628715 |
Target: 5'- cGGAG-CCCUGGgcccGGGCCGUgCUGg-- -3' miRNA: 3'- aCCUCuGGGACC----UCCGGUAaGACaaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 40812 | 0.72 | 0.607776 |
Target: 5'- uUGGAGcgccCCCUGGGGGCCg--CUGg-- -3' miRNA: 3'- -ACCUCu---GGGACCUCCGGuaaGACaaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 106847 | 0.73 | 0.566187 |
Target: 5'- aUGGAGGCCCUGG-GGCCGcgCg---- -3' miRNA: 3'- -ACCUCUGGGACCuCCGGUaaGacaaa -5' |
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5508 | 3' | -55.1 | NC_001798.1 | + | 14503 | 0.74 | 0.484738 |
Target: 5'- cGGGGACCCgggugacuucgucUGGGGGCCuuucUCUGUg- -3' miRNA: 3'- aCCUCUGGG-------------ACCUCCGGua--AGACAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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