miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5508 5' -51.5 NC_001798.1 + 1980 0.66 0.993198
Target:  5'- cGAGACGUcgGGGGC--GCGg-UCCAg -3'
miRNA:   3'- cCUCUGCAaaCCCUGcuUGCagAGGU- -5'
5508 5' -51.5 NC_001798.1 + 6241 0.67 0.983353
Target:  5'- gGGGGACGggcggGGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaa--CCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 6521 0.69 0.961896
Target:  5'- gGGGGACGgg-GGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaaCCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 6558 0.66 0.994104
Target:  5'- gGGGGACGggccgggGGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaa----CCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 6600 0.66 0.994104
Target:  5'- gGGGGACGggccgggGGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaa----CCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 11178 0.66 0.989799
Target:  5'- uGGGGGCGg-UGGGGCGGGCcug-CCGa -3'
miRNA:   3'- -CCUCUGCaaACCCUGCUUGcagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 11362 0.7 0.936596
Target:  5'- gGGGGGUGUUUGGGugGGAuCGcagcucggCUCCGa -3'
miRNA:   3'- -CCUCUGCAAACCCugCUU-GCa-------GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 12711 0.66 0.989799
Target:  5'- uGGGGGCGgcgGGGGCGuggugcggcgcGACGUC-CUg -3'
miRNA:   3'- -CCUCUGCaaaCCCUGC-----------UUGCAGaGGu -5'
5508 5' -51.5 NC_001798.1 + 15002 0.76 0.693443
Target:  5'- cGAGGCGUguugGGGGCGAGCGgC-CCAa -3'
miRNA:   3'- cCUCUGCAaa--CCCUGCUUGCaGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 15948 0.67 0.981342
Target:  5'- cGGGGGCccaaUGGGGCGGcagaccccgACGUCUuCCGu -3'
miRNA:   3'- -CCUCUGcaa-ACCCUGCU---------UGCAGA-GGU- -5'
5508 5' -51.5 NC_001798.1 + 16184 0.66 0.991054
Target:  5'- cGGGGACcgggGGGACGcACGggccgccCUCCGc -3'
miRNA:   3'- -CCUCUGcaaaCCCUGCuUGCa------GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 18222 0.75 0.709744
Target:  5'- gGGGGACGgugggcgggaaGGGugGAugGUUUCCGg -3'
miRNA:   3'- -CCUCUGCaaa--------CCCugCUugCAGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 18318 0.71 0.917226
Target:  5'- cGGGGcCGUguuugucuccggcGGGACGGACGcCUCCu -3'
miRNA:   3'- -CCUCuGCAaa-----------CCCUGCUUGCaGAGGu -5'
5508 5' -51.5 NC_001798.1 + 22763 0.68 0.976784
Target:  5'- uGGcGGACGa---GGACGGgggACGUCUCCGg -3'
miRNA:   3'- -CC-UCUGCaaacCCUGCU---UGCAGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 27031 0.69 0.961896
Target:  5'- cGGGGGuCGg--GcGGGCGGcACGUCUCCc -3'
miRNA:   3'- -CCUCU-GCaaaC-CCUGCU-UGCAGAGGu -5'
5508 5' -51.5 NC_001798.1 + 27422 0.66 0.992184
Target:  5'- gGGGGGCGgggagcUUGGGAgugugUGGugGUCUgCGg -3'
miRNA:   3'- -CCUCUGCa-----AACCCU-----GCUugCAGAgGU- -5'
5508 5' -51.5 NC_001798.1 + 31151 0.69 0.958267
Target:  5'- cGGGGGCGgcggugcgGGGGCGAcccGCGgaacCUCCc -3'
miRNA:   3'- -CCUCUGCaaa-----CCCUGCU---UGCa---GAGGu -5'
5508 5' -51.5 NC_001798.1 + 39905 0.71 0.902547
Target:  5'- gGGGGACcUUUGGGAacgccgcguCGAugGcCUCCGc -3'
miRNA:   3'- -CCUCUGcAAACCCU---------GCUugCaGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 56552 0.66 0.994834
Target:  5'- --cGAUGUcUGGGACGcGACGgccaccuUCUCCGc -3'
miRNA:   3'- ccuCUGCAaACCCUGC-UUGC-------AGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 57523 0.7 0.928381
Target:  5'- gGGGGGCGUgggugugguucggGGGGCGGAUGcgUUCCGc -3'
miRNA:   3'- -CCUCUGCAaa-----------CCCUGCUUGCa-GAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.