miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5508 5' -51.5 NC_001798.1 + 133723 0.69 0.961896
Target:  5'- cGGGA-GUUUGGGGCGcGCG-CUUCAa -3'
miRNA:   3'- cCUCUgCAAACCCUGCuUGCaGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 59554 0.69 0.961896
Target:  5'- cGGAGAgGgggcUGGGGCucGCGUCgCCGg -3'
miRNA:   3'- -CCUCUgCaa--ACCCUGcuUGCAGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 27031 0.69 0.961896
Target:  5'- cGGGGGuCGg--GcGGGCGGcACGUCUCCc -3'
miRNA:   3'- -CCUCU-GCaaaC-CCUGCU-UGCAGAGGu -5'
5508 5' -51.5 NC_001798.1 + 6521 0.69 0.961896
Target:  5'- gGGGGACGgg-GGGACGGggggACGgg-CCGg -3'
miRNA:   3'- -CCUCUGCaaaCCCUGCU----UGCagaGGU- -5'
5508 5' -51.5 NC_001798.1 + 100782 0.69 0.961896
Target:  5'- gGGAGuaGUggGGGGCGggUGUCggCCGu -3'
miRNA:   3'- -CCUCugCAaaCCCUGCuuGCAGa-GGU- -5'
5508 5' -51.5 NC_001798.1 + 85828 0.69 0.958267
Target:  5'- gGGGGGCG---GGGGCGGGCGggggCUCgGg -3'
miRNA:   3'- -CCUCUGCaaaCCCUGCUUGCa---GAGgU- -5'
5508 5' -51.5 NC_001798.1 + 31151 0.69 0.958267
Target:  5'- cGGGGGCGgcggugcgGGGGCGAcccGCGgaacCUCCc -3'
miRNA:   3'- -CCUCUGCaaa-----CCCUGCU---UGCa---GAGGu -5'
5508 5' -51.5 NC_001798.1 + 78929 0.7 0.941412
Target:  5'- cGAGGCGgagUGGGACGAG-GUCUg-- -3'
miRNA:   3'- cCUCUGCaa-ACCCUGCUUgCAGAggu -5'
5508 5' -51.5 NC_001798.1 + 11362 0.7 0.936596
Target:  5'- gGGGGGUGUUUGGGugGGAuCGcagcucggCUCCGa -3'
miRNA:   3'- -CCUCUGCAAACCCugCUU-GCa-------GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 57523 0.7 0.928381
Target:  5'- gGGGGGCGUgggugugguucggGGGGCGGAUGcgUUCCGc -3'
miRNA:   3'- -CCUCUGCAaa-----------CCCUGCUUGCa-GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 18318 0.71 0.917226
Target:  5'- cGGGGcCGUguuugucuccggcGGGACGGACGcCUCCu -3'
miRNA:   3'- -CCUCuGCAaa-----------CCCUGCUUGCaGAGGu -5'
5508 5' -51.5 NC_001798.1 + 39905 0.71 0.902547
Target:  5'- gGGGGACcUUUGGGAacgccgcguCGAugGcCUCCGc -3'
miRNA:   3'- -CCUCUGcAAACCCU---------GCUugCaGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 58805 0.72 0.859917
Target:  5'- aGGAGGaaaagGGGAUGGACGUCgucggCCAg -3'
miRNA:   3'- -CCUCUgcaaaCCCUGCUUGCAGa----GGU- -5'
5508 5' -51.5 NC_001798.1 + 64629 0.73 0.843953
Target:  5'- aGAG-CGUgUUGGGGCGcAGCGUCUCg- -3'
miRNA:   3'- cCUCuGCA-AACCCUGC-UUGCAGAGgu -5'
5508 5' -51.5 NC_001798.1 + 18222 0.75 0.709744
Target:  5'- gGGGGACGgugggcgggaaGGGugGAugGUUUCCGg -3'
miRNA:   3'- -CCUCUGCaaa--------CCCugCUugCAGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 15002 0.76 0.693443
Target:  5'- cGAGGCGUguugGGGGCGAGCGgC-CCAa -3'
miRNA:   3'- cCUCUGCAaa--CCCUGCUUGCaGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 102031 0.76 0.672881
Target:  5'- cGGGGugG-UUGGG-CGGGgGUCUCCGu -3'
miRNA:   3'- -CCUCugCaAACCCuGCUUgCAGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.