miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 5' -58.5 NC_001798.1 + 90244 0.76 0.289011
Target:  5'- -cGGAAaggCCAGCuCGuCCUCCCCCCc -3'
miRNA:   3'- gaCCUUaa-GGUCGuGC-GGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 72255 0.74 0.353963
Target:  5'- -cGG---UCCAGC-UGCCUCCCCCCc -3'
miRNA:   3'- gaCCuuaAGGUCGuGCGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 153839 0.74 0.353963
Target:  5'- -cGGGGccUCCGGCGC-CUUCCCCCCGc -3'
miRNA:   3'- gaCCUUa-AGGUCGUGcGGAGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 76258 0.74 0.353963
Target:  5'- -gGGAcgUCgcuCAGCGCGCCgcgcUCCCCCCc -3'
miRNA:   3'- gaCCUuaAG---GUCGUGCGG----AGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 136547 0.74 0.369728
Target:  5'- uUGGAAUUCCAGCA-GCUUCCCaugacgCCGg -3'
miRNA:   3'- gACCUUAAGGUCGUgCGGAGGGg-----GGU- -5'
5509 5' -58.5 NC_001798.1 + 123427 0.72 0.455416
Target:  5'- -cGGGucaCCGGgGCGCC-CCCCCCGa -3'
miRNA:   3'- gaCCUuaaGGUCgUGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 126266 0.72 0.464567
Target:  5'- -cGGGcgUCCGG-ACGCCcaagcggccccUCCCCCCGa -3'
miRNA:   3'- gaCCUuaAGGUCgUGCGG-----------AGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 122734 0.72 0.473813
Target:  5'- cCUGGAGaaCCugauGCGCGCCUCgaggggaccgCCCCCGa -3'
miRNA:   3'- -GACCUUaaGGu---CGUGCGGAG----------GGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 135052 0.71 0.48315
Target:  5'- -cGGAGgcggCCGGC-CGCCUCCUgCCCGc -3'
miRNA:   3'- gaCCUUaa--GGUCGuGCGGAGGG-GGGU- -5'
5509 5' -58.5 NC_001798.1 + 82316 0.71 0.531069
Target:  5'- -cGGAGgcCCGGUugccCGCCgCCCCCCAc -3'
miRNA:   3'- gaCCUUaaGGUCGu---GCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 28397 0.7 0.550727
Target:  5'- -cGGGAa---GGUACGCCUCCCCuCCGa -3'
miRNA:   3'- gaCCUUaaggUCGUGCGGAGGGG-GGU- -5'
5509 5' -58.5 NC_001798.1 + 123379 0.7 0.590644
Target:  5'- uCUGGcg-UCCccaGGCgACGCCaggCCCCCCGg -3'
miRNA:   3'- -GACCuuaAGG---UCG-UGCGGa--GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 77419 0.7 0.590644
Target:  5'- cCUGGuagUCCAgGCGCGCCgggCCUgcgCCCAg -3'
miRNA:   3'- -GACCuuaAGGU-CGUGCGGa--GGG---GGGU- -5'
5509 5' -58.5 NC_001798.1 + 149314 0.69 0.610806
Target:  5'- gUGGAAgUCCAGCGCGCCcaccagggUgCCCUg -3'
miRNA:   3'- gACCUUaAGGUCGUGCGGa-------GgGGGGu -5'
5509 5' -58.5 NC_001798.1 + 72345 0.69 0.620914
Target:  5'- -aGGAGcucgCCgAGCGCGCCgaCCCCCUg -3'
miRNA:   3'- gaCCUUaa--GG-UCGUGCGGa-GGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 43332 0.69 0.63103
Target:  5'- uCUGGGGgg-CGGCAgUGCCgCCCCCCGc -3'
miRNA:   3'- -GACCUUaagGUCGU-GCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 35353 0.69 0.63103
Target:  5'- -------gCUGGCGCGCCcCCCCCCAa -3'
miRNA:   3'- gaccuuaaGGUCGUGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 132149 0.69 0.640135
Target:  5'- -cGGGgg-CCGGCgggcgggGCGCC-CCCCCCGg -3'
miRNA:   3'- gaCCUuaaGGUCG-------UGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 50414 0.69 0.641146
Target:  5'- -cGGG----CGGCGCGCCccCCCCCCAc -3'
miRNA:   3'- gaCCUuaagGUCGUGCGGa-GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 57163 0.69 0.641146
Target:  5'- gCUGGcgcccgggCCGGCGC-CCUCCgCCCAg -3'
miRNA:   3'- -GACCuuaa----GGUCGUGcGGAGGgGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.