miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 5' -58.5 NC_001798.1 + 133 0.67 0.768066
Target:  5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3'
miRNA:   3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 448 0.67 0.759629
Target:  5'- -cGGGGcugcggUCCcgcGGC-CGCCUCCCCCgCGg -3'
miRNA:   3'- gaCCUUa-----AGG---UCGuGCGGAGGGGG-GU- -5'
5509 5' -58.5 NC_001798.1 + 506 0.67 0.7309
Target:  5'- -gGGGcUUCCccCGCcCCUCCCCCCGc -3'
miRNA:   3'- gaCCUuAAGGucGUGcGGAGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 4116 0.67 0.768997
Target:  5'- cCUGGGcgggcucggCCGGgGCGCCg-CCCCCGg -3'
miRNA:   3'- -GACCUuaa------GGUCgUGCGGagGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 9889 0.66 0.787366
Target:  5'- gUGGAgg-CCAGcCACGCCaaCCCCgGg -3'
miRNA:   3'- gACCUuaaGGUC-GUGCGGagGGGGgU- -5'
5509 5' -58.5 NC_001798.1 + 18607 0.66 0.813876
Target:  5'- -cGGG--UCC-GCGCGCCgUCCCgCCGu -3'
miRNA:   3'- gaCCUuaAGGuCGUGCGG-AGGGgGGU- -5'
5509 5' -58.5 NC_001798.1 + 19216 0.66 0.80519
Target:  5'- gUGGAccccGUUCCccGCAgCGCCUaaucaCCCCCu -3'
miRNA:   3'- gACCU----UAAGGu-CGU-GCGGAg----GGGGGu -5'
5509 5' -58.5 NC_001798.1 + 23344 0.66 0.79635
Target:  5'- -------gCCGGCGCGCC-CCCCgCCGg -3'
miRNA:   3'- gaccuuaaGGUCGUGCGGaGGGG-GGU- -5'
5509 5' -58.5 NC_001798.1 + 24688 0.66 0.79635
Target:  5'- -cGGAGc-CCGGCcCGCCgcgCCCCCg- -3'
miRNA:   3'- gaCCUUaaGGUCGuGCGGa--GGGGGgu -5'
5509 5' -58.5 NC_001798.1 + 27937 0.66 0.80519
Target:  5'- -cGGggUcCCGGCGCcgGCCgCgCCCCGg -3'
miRNA:   3'- gaCCuuAaGGUCGUG--CGGaGgGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 28397 0.7 0.550727
Target:  5'- -cGGGAa---GGUACGCCUCCCCuCCGa -3'
miRNA:   3'- gaCCUUaaggUCGUGCGGAGGGG-GGU- -5'
5509 5' -58.5 NC_001798.1 + 29992 0.66 0.80519
Target:  5'- gUGGg---CC-GUGCGCCgCCCCCCGa -3'
miRNA:   3'- gACCuuaaGGuCGUGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 31550 0.66 0.775484
Target:  5'- -gGGAggUCUgccacagucgucggGGCGCGCCgcgCgCCCCCGc -3'
miRNA:   3'- gaCCUuaAGG--------------UCGUGCGGa--G-GGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 35353 0.69 0.63103
Target:  5'- -------gCUGGCGCGCCcCCCCCCAa -3'
miRNA:   3'- gaccuuaaGGUCGUGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 37615 0.66 0.813876
Target:  5'- uUGGccUUCCuuuGGCGguaaGCUUCCCCCCu -3'
miRNA:   3'- gACCuuAAGG---UCGUg---CGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 43332 0.69 0.63103
Target:  5'- uCUGGGGgg-CGGCAgUGCCgCCCCCCGc -3'
miRNA:   3'- -GACCUUaagGUCGU-GCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 50414 0.69 0.641146
Target:  5'- -cGGG----CGGCGCGCCccCCCCCCAc -3'
miRNA:   3'- gaCCUuaagGUCGUGCGGa-GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 54613 0.67 0.759629
Target:  5'- -cGGGGcgCCccCGCGCCUCCCgCCCc -3'
miRNA:   3'- gaCCUUaaGGucGUGCGGAGGG-GGGu -5'
5509 5' -58.5 NC_001798.1 + 57163 0.69 0.641146
Target:  5'- gCUGGcgcccgggCCGGCGC-CCUCCgCCCAg -3'
miRNA:   3'- -GACCuuaa----GGUCGUGcGGAGGgGGGU- -5'
5509 5' -58.5 NC_001798.1 + 58890 0.67 0.768997
Target:  5'- -cGGAAccCCcggaGGCGCGCCggCCuCCCCGa -3'
miRNA:   3'- gaCCUUaaGG----UCGUGCGGa-GG-GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.