miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 5' -58.5 NC_001798.1 + 86898 0.67 0.759629
Target:  5'- -gGGAAccCCGGCguggaGCGCCgggCCUCCCGc -3'
miRNA:   3'- gaCCUUaaGGUCG-----UGCGGa--GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 125263 0.67 0.759629
Target:  5'- -cGGcGUccUCCGGCGCGCaCUCCCgaaaCCGc -3'
miRNA:   3'- gaCCuUA--AGGUCGUGCG-GAGGGg---GGU- -5'
5509 5' -58.5 NC_001798.1 + 75938 0.67 0.750151
Target:  5'- -cGGggUcgacucggucUCgCAGCGCGCCgggCCCCUg- -3'
miRNA:   3'- gaCCuuA----------AG-GUCGUGCGGa--GGGGGgu -5'
5509 5' -58.5 NC_001798.1 + 105220 0.67 0.750151
Target:  5'- gCUGccccgUCCgcAGCGC-CCUCCCCCCu -3'
miRNA:   3'- -GACcuua-AGG--UCGUGcGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 128291 0.67 0.740572
Target:  5'- uCUGGcg--CCuGaCGCGCCgcgCCCCCCc -3'
miRNA:   3'- -GACCuuaaGGuC-GUGCGGa--GGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 129694 0.67 0.740572
Target:  5'- -gGGGccccaGUaCCGGCGCGCaucggaCCCCCCAu -3'
miRNA:   3'- gaCCU-----UAaGGUCGUGCGga----GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 125328 0.67 0.7309
Target:  5'- -aGGAAcUCCAGcUugGCCguguggUCgCCCCCAa -3'
miRNA:   3'- gaCCUUaAGGUC-GugCGG------AG-GGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 506 0.67 0.7309
Target:  5'- -gGGGcUUCCccCGCcCCUCCCCCCGc -3'
miRNA:   3'- gaCCUuAAGGucGUGcGGAGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 146602 0.67 0.721145
Target:  5'- -cGGcg--CCAGCggcccACGCCUCCCgCCGc -3'
miRNA:   3'- gaCCuuaaGGUCG-----UGCGGAGGGgGGU- -5'
5509 5' -58.5 NC_001798.1 + 75705 0.67 0.721145
Target:  5'- cCUGGAucUgCAGCugcGCGCCgCCCCgCCGg -3'
miRNA:   3'- -GACCUuaAgGUCG---UGCGGaGGGG-GGU- -5'
5509 5' -58.5 NC_001798.1 + 74787 0.68 0.701418
Target:  5'- -cGGG--UCCAccGCACGCCgccccgCCCCCgCAg -3'
miRNA:   3'- gaCCUuaAGGU--CGUGCGGa-----GGGGG-GU- -5'
5509 5' -58.5 NC_001798.1 + 123799 0.68 0.701418
Target:  5'- cCUGGA-----AGC-UGCCUCCCCCCc -3'
miRNA:   3'- -GACCUuaaggUCGuGCGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 132076 0.68 0.701418
Target:  5'- -cGGAuUUUCGGCGCGCCguugucuguUUCUCCCGc -3'
miRNA:   3'- gaCCUuAAGGUCGUGCGG---------AGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 50414 0.69 0.641146
Target:  5'- -cGGG----CGGCGCGCCccCCCCCCAc -3'
miRNA:   3'- gaCCUuaagGUCGUGCGGa-GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 57163 0.69 0.641146
Target:  5'- gCUGGcgcccgggCCGGCGC-CCUCCgCCCAg -3'
miRNA:   3'- -GACCuuaa----GGUCGUGcGGAGGgGGGU- -5'
5509 5' -58.5 NC_001798.1 + 132149 0.69 0.640135
Target:  5'- -cGGGgg-CCGGCgggcgggGCGCC-CCCCCCGg -3'
miRNA:   3'- gaCCUuaaGGUCG-------UGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 43332 0.69 0.63103
Target:  5'- uCUGGGGgg-CGGCAgUGCCgCCCCCCGc -3'
miRNA:   3'- -GACCUUaagGUCGU-GCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 35353 0.69 0.63103
Target:  5'- -------gCUGGCGCGCCcCCCCCCAa -3'
miRNA:   3'- gaccuuaaGGUCGUGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 72345 0.69 0.620914
Target:  5'- -aGGAGcucgCCgAGCGCGCCgaCCCCCUg -3'
miRNA:   3'- gaCCUUaa--GG-UCGUGCGGa-GGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 149314 0.69 0.610806
Target:  5'- gUGGAAgUCCAGCGCGCCcaccagggUgCCCUg -3'
miRNA:   3'- gACCUUaAGGUCGUGCGGa-------GgGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.