miRNA display CGI


Results 61 - 80 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 53449 0.67 0.389751
Target:  5'- uGUCgGGCGGCCAgCUgaGCCGC-GC-Ca -3'
miRNA:   3'- -CAGgCCGCCGGUgGGg-CGGCGuCGaG- -5'
5510 3' -66.6 NC_001798.1 + 2566 0.67 0.388964
Target:  5'- ---gGGCGGCCGCggggcggggggcgUCCG-CGCGGCUCu -3'
miRNA:   3'- caggCCGCCGGUG-------------GGGCgGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 43879 0.67 0.381928
Target:  5'- -cCCaGCGGCCgcgGCCCCGCgggaGUacuGGCUCu -3'
miRNA:   3'- caGGcCGCCGG---UGGGGCGg---CG---UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 27984 0.67 0.381928
Target:  5'- -cCCGGCGcuccagccguGCCgcGCCCCGgCGC-GCUCc -3'
miRNA:   3'- caGGCCGC----------CGG--UGGGGCgGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 109360 0.67 0.3666
Target:  5'- -gCCGGCcuGGCCGCCCgGggaGCAGCg- -3'
miRNA:   3'- caGGCCG--CCGGUGGGgCgg-CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 104172 0.67 0.373445
Target:  5'- cGUCCaggcacagGGCGGCCAgCCCCGgaaacaaCUGgguCAGCUCg -3'
miRNA:   3'- -CAGG--------CCGCCGGU-GGGGC-------GGC---GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 35015 0.67 0.374211
Target:  5'- -cUCGGCGGCCaaGCCCCGgcCCGCccggGGgUCc -3'
miRNA:   3'- caGGCCGCCGG--UGGGGC--GGCG----UCgAG- -5'
5510 3' -66.6 NC_001798.1 + 44162 0.67 0.374211
Target:  5'- -cCCGGCGGUaCGCCCCcaGCaCGCGcGcCUCg -3'
miRNA:   3'- caGGCCGCCG-GUGGGG--CG-GCGU-C-GAG- -5'
5510 3' -66.6 NC_001798.1 + 126468 0.67 0.381928
Target:  5'- gGUCCGaGaCGGCCAugaccucgcCCCCGUCGCccccCUCg -3'
miRNA:   3'- -CAGGC-C-GCCGGU---------GGGGCGGCGuc--GAG- -5'
5510 3' -66.6 NC_001798.1 + 47650 0.68 0.330168
Target:  5'- aGUCCGcGCGaCgACuUCCGCCGCGGCg- -3'
miRNA:   3'- -CAGGC-CGCcGgUG-GGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 55770 0.68 0.330168
Target:  5'- -gCCGGCGcGCUgcaGCCgCCGaCCGCcuGCUCg -3'
miRNA:   3'- caGGCCGC-CGG---UGG-GGC-GGCGu-CGAG- -5'
5510 3' -66.6 NC_001798.1 + 64267 0.68 0.337236
Target:  5'- -gCCGGCGaaCACCCCGCUGUuGgUCg -3'
miRNA:   3'- caGGCCGCcgGUGGGGCGGCGuCgAG- -5'
5510 3' -66.6 NC_001798.1 + 58476 0.68 0.344414
Target:  5'- -gCCGuGCGGCC-CCgUCGCCGCAGa-- -3'
miRNA:   3'- caGGC-CGCCGGuGG-GGCGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 59837 0.68 0.344414
Target:  5'- -gCC-GCGGUCGCCCgCGUC-CGGCUCg -3'
miRNA:   3'- caGGcCGCCGGUGGG-GCGGcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 153845 0.68 0.344414
Target:  5'- cUCCGGC-GCCuuccCCCCGCCcucGCUCg -3'
miRNA:   3'- cAGGCCGcCGGu---GGGGCGGcguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 58037 0.68 0.344414
Target:  5'- aUCC-GCGGCCGcaccagcacCCCCGCCGCAa--- -3'
miRNA:   3'- cAGGcCGCCGGU---------GGGGCGGCGUcgag -5'
5510 3' -66.6 NC_001798.1 + 112197 0.68 0.344414
Target:  5'- cGUCCcGCaGGCCGCgCUGgCGgAGCUCg -3'
miRNA:   3'- -CAGGcCG-CCGGUGgGGCgGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 137936 0.68 0.344414
Target:  5'- cUCCccCGGCCGCCcgguCCGCCGCGcgcuGCUCc -3'
miRNA:   3'- cAGGccGCCGGUGG----GGCGGCGU----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 150808 0.68 0.344414
Target:  5'- --aCGGgGcGCCGCCgCUGCUGCuGCUCc -3'
miRNA:   3'- cagGCCgC-CGGUGG-GGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 47814 0.68 0.329468
Target:  5'- cGUCgCGGgcucucaCGGCCccgGCCCCGCgCGC-GCUCc -3'
miRNA:   3'- -CAG-GCC-------GCCGG---UGGGGCG-GCGuCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.