miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 93929 0.68 0.302995
Target:  5'- -aCCGcGCGGCCACCgaGCgCGUcauggccgAGCUCg -3'
miRNA:   3'- caGGC-CGCCGGUGGggCG-GCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 121273 0.68 0.302995
Target:  5'- uGUCCGcccucgugcGCGGCCGCCCCGaCgGUggGGCg- -3'
miRNA:   3'- -CAGGC---------CGCCGGUGGGGC-GgCG--UCGag -5'
5510 3' -66.6 NC_001798.1 + 54435 0.68 0.301682
Target:  5'- -cCCGGCGcgacaacGCaC-CCCCGCCGCucccccgGGCUCg -3'
miRNA:   3'- caGGCCGC-------CG-GuGGGGCGGCG-------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 53631 0.68 0.32321
Target:  5'- -gCCGccGCGGCCAaguaCgCCGCCGCGGUg- -3'
miRNA:   3'- caGGC--CGCCGGUg---G-GGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 4028 0.68 0.32321
Target:  5'- cGUCgCGGcCGGCCACCgCCGCgcgggcccgGCGGCg- -3'
miRNA:   3'- -CAG-GCC-GCCGGUGG-GGCGg--------CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 115817 0.68 0.32321
Target:  5'- uGUCCGGUGGCguuucgugaCGCCCgggGCCuGgAGCUCg -3'
miRNA:   3'- -CAGGCCGCCG---------GUGGGg--CGG-CgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 76373 0.68 0.347316
Target:  5'- -cCUGGCGGCCuggcucucgguccugACCgaCGCCGCgacccaggGGCUCa -3'
miRNA:   3'- caGGCCGCCGG---------------UGGg-GCGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 150808 0.68 0.344414
Target:  5'- --aCGGgGcGCCGCCgCUGCUGCuGCUCc -3'
miRNA:   3'- cagGCCgC-CGGUGG-GGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 137936 0.68 0.344414
Target:  5'- cUCCccCGGCCGCCcgguCCGCCGCGcgcuGCUCc -3'
miRNA:   3'- cAGGccGCCGGUGG----GGCGGCGU----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 112197 0.68 0.344414
Target:  5'- cGUCCcGCaGGCCGCgCUGgCGgAGCUCg -3'
miRNA:   3'- -CAGGcCG-CCGGUGgGGCgGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 58037 0.68 0.344414
Target:  5'- aUCC-GCGGCCGcaccagcacCCCCGCCGCAa--- -3'
miRNA:   3'- cAGGcCGCCGGU---------GGGGCGGCGUcgag -5'
5510 3' -66.6 NC_001798.1 + 153845 0.68 0.344414
Target:  5'- cUCCGGC-GCCuuccCCCCGCCcucGCUCg -3'
miRNA:   3'- cAGGCCGcCGGu---GGGGCGGcguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 59837 0.68 0.344414
Target:  5'- -gCC-GCGGUCGCCCgCGUC-CGGCUCg -3'
miRNA:   3'- caGGcCGCCGGUGGG-GCGGcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 58476 0.68 0.344414
Target:  5'- -gCCGuGCGGCC-CCgUCGCCGCAGa-- -3'
miRNA:   3'- caGGC-CGCCGGuGG-GGCGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 64267 0.68 0.337236
Target:  5'- -gCCGGCGaaCACCCCGCUGUuGgUCg -3'
miRNA:   3'- caGGCCGCcgGUGGGGCGGCGuCgAG- -5'
5510 3' -66.6 NC_001798.1 + 55770 0.68 0.330168
Target:  5'- -gCCGGCGcGCUgcaGCCgCCGaCCGCcuGCUCg -3'
miRNA:   3'- caGGCCGC-CGG---UGG-GGC-GGCGu-CGAG- -5'
5510 3' -66.6 NC_001798.1 + 47650 0.68 0.330168
Target:  5'- aGUCCGcGCGaCgACuUCCGCCGCGGCg- -3'
miRNA:   3'- -CAGGC-CGCcGgUG-GGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 47814 0.68 0.329468
Target:  5'- cGUCgCGGgcucucaCGGCCccgGCCCCGCgCGC-GCUCc -3'
miRNA:   3'- -CAG-GCC-------GCCGG---UGGGGCG-GCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 154123 0.68 0.32321
Target:  5'- -cCCGGCGGCggggACCCCGgCgGCGGgaCa -3'
miRNA:   3'- caGGCCGCCGg---UGGGGC-GgCGUCgaG- -5'
5510 3' -66.6 NC_001798.1 + 135285 0.68 0.32321
Target:  5'- --gUGGCGGCCGCCCCcUCGgAGCc- -3'
miRNA:   3'- cagGCCGCCGGUGGGGcGGCgUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.