Results 141 - 160 of 184 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 75457 | 0.71 | 0.197255 |
Target: 5'- -gCCggGGUGGCCgGCCCgGCCGCGGCc- -3' miRNA: 3'- caGG--CCGCCGG-UGGGgCGGCGUCGag -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 48170 | 0.71 | 0.192693 |
Target: 5'- -cCUGGCGGCCACgCaCGCC-CGGCUg -3' miRNA: 3'- caGGCCGCCGGUGgG-GCGGcGUCGAg -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 35609 | 0.71 | 0.192693 |
Target: 5'- cUCCGGgGGCuccgCACUCUGCC-CGGCUCg -3' miRNA: 3'- cAGGCCgCCG----GUGGGGCGGcGUCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 55009 | 0.71 | 0.211508 |
Target: 5'- -gCCGGCggGGCCGCCCUGCCGggagacgcccCGGaCUCc -3' miRNA: 3'- caGGCCG--CCGGUGGGGCGGC----------GUC-GAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 97279 | 0.71 | 0.211508 |
Target: 5'- cGUUCGGgGGCCACCUgGCgGC-GCUg -3' miRNA: 3'- -CAGGCCgCCGGUGGGgCGgCGuCGAg -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 145726 | 0.71 | 0.221496 |
Target: 5'- -cCCGGCcccGGCCcgcGCCCCGCCGCcacacccacGGCa- -3' miRNA: 3'- caGGCCG---CCGG---UGGGGCGGCG---------UCGag -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 78285 | 0.71 | 0.216453 |
Target: 5'- -cCUGGCGGCCGCCgCGgagcagauauCCGCGGCcCg -3' miRNA: 3'- caGGCCGCCGGUGGgGC----------GGCGUCGaG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 51931 | 0.71 | 0.216453 |
Target: 5'- --gUGGgGGCCGCCgCCguGCCGCuGCUCa -3' miRNA: 3'- cagGCCgCCGGUGG-GG--CGGCGuCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 114100 | 0.71 | 0.216453 |
Target: 5'- -gCC-GCGGCCAUCCUGCCcacCGGCUCc -3' miRNA: 3'- caGGcCGCCGGUGGGGCGGc--GUCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 139422 | 0.71 | 0.211508 |
Target: 5'- -cCCGG-GGCCAgaCCCGCCGUgcGGUUCa -3' miRNA: 3'- caGGCCgCCGGUg-GGGCGGCG--UCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 137973 | 0.71 | 0.211508 |
Target: 5'- cUCCaGCGcccCCGCCUgggcgCGCCGCAGCUCg -3' miRNA: 3'- cAGGcCGCc--GGUGGG-----GCGGCGUCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 3995 | 0.72 | 0.17956 |
Target: 5'- -gCCGG-GGCCGCCCgGCCGUgaAGCg- -3' miRNA: 3'- caGGCCgCCGGUGGGgCGGCG--UCGag -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 5591 | 0.72 | 0.17956 |
Target: 5'- -gCCGGCgaGGUCGCCCCGUUgguccgcggGCGGCUCc -3' miRNA: 3'- caGGCCG--CCGGUGGGGCGG---------CGUCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 74410 | 0.72 | 0.17956 |
Target: 5'- -gCCGGCGGaCCugaCCGCCGCGGCc- -3' miRNA: 3'- caGGCCGCC-GGuggGGCGGCGUCGag -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 78348 | 0.72 | 0.17956 |
Target: 5'- gGUCCGGaccggGGUCACCCUGCCGUgucccAGCg- -3' miRNA: 3'- -CAGGCCg----CCGGUGGGGCGGCG-----UCGag -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 134167 | 0.72 | 0.17956 |
Target: 5'- -gCCGucGCGGCCGCCCgCGCCGCgacGGCc- -3' miRNA: 3'- caGGC--CGCCGGUGGG-GCGGCG---UCGag -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 29040 | 0.72 | 0.17956 |
Target: 5'- -cCCGGCGaCCGCCCCGCgC-CGGCUUc -3' miRNA: 3'- caGGCCGCcGGUGGGGCG-GcGUCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 109071 | 0.72 | 0.188225 |
Target: 5'- uGUCCuGGgGGCCccgACgCCCGCCGacaaCGGCUCg -3' miRNA: 3'- -CAGG-CCgCCGG---UG-GGGCGGC----GUCGAG- -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 7887 | 0.72 | 0.188225 |
Target: 5'- --gCGGaCGGCCGCCaugaauuuuaUCGCCGCGGCUg -3' miRNA: 3'- cagGCC-GCCGGUGG----------GGCGGCGUCGAg -5' |
|||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 82164 | 0.72 | 0.175362 |
Target: 5'- -gCCGaccacGCGGCCGCgguuUCCGCCGCAGCg- -3' miRNA: 3'- caGGC-----CGCCGGUG----GGGCGGCGUCGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home