miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 43526 0.7 0.226639
Target:  5'- --gCGGCGGCCGCgucuCCCGCCaggGCGGUUUc -3'
miRNA:   3'- cagGCCGCCGGUG----GGGCGG---CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 25456 0.7 0.226639
Target:  5'- -cCCGGCGG-CGCgCCCGCCGCcuucGGCcCg -3'
miRNA:   3'- caGGCCGCCgGUG-GGGCGGCG----UCGaG- -5'
5510 3' -66.6 NC_001798.1 + 104150 0.7 0.226639
Target:  5'- -gCCaGUGGCCGCCCCGCCugGGCg- -3'
miRNA:   3'- caGGcCGCCGGUGGGGCGGcgUCGag -5'
5510 3' -66.6 NC_001798.1 + 35556 0.7 0.226639
Target:  5'- -gCCGGCccGGCCcgGCCCCGgagcCCGCGGCg- -3'
miRNA:   3'- caGGCCG--CCGG--UGGGGC----GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 33634 0.7 0.231883
Target:  5'- -cCCGGCGcCCACCCCGcCCGCAcaccuGCcCg -3'
miRNA:   3'- caGGCCGCcGGUGGGGC-GGCGU-----CGaG- -5'
5510 3' -66.6 NC_001798.1 + 94438 0.7 0.231883
Target:  5'- --aCGGcCGGCCAgacggcCCCCGCCgagaGCAGCUUc -3'
miRNA:   3'- cagGCC-GCCGGU------GGGGCGG----CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 37412 0.7 0.237229
Target:  5'- gGUCCGuGgGGCCggccgaccaACCCCGCgUGCAaaGCUCg -3'
miRNA:   3'- -CAGGC-CgCCGG---------UGGGGCG-GCGU--CGAG- -5'
5510 3' -66.6 NC_001798.1 + 68226 0.69 0.283767
Target:  5'- ---aGGCccGCCACCCCGCCGCGcGC-Ca -3'
miRNA:   3'- caggCCGc-CGGUGGGGCGGCGU-CGaG- -5'
5510 3' -66.6 NC_001798.1 + 1144 0.69 0.259648
Target:  5'- -cUCGGCGGCguggccaGCCCCGCgGCGGUc- -3'
miRNA:   3'- caGGCCGCCGg------UGGGGCGgCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 134196 0.69 0.277575
Target:  5'- -cCCGGCcGCCuCCCCGCUGgAGCc- -3'
miRNA:   3'- caGGCCGcCGGuGGGGCGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 126740 0.69 0.265517
Target:  5'- cUUCGcGCGGCCGCaCCCacgacauCCGCGGCUUu -3'
miRNA:   3'- cAGGC-CGCCGGUG-GGGc------GGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 58005 0.69 0.259648
Target:  5'- --aUGGCGaUCACCCCGaCCGCcGGCUCg -3'
miRNA:   3'- cagGCCGCcGGUGGGGC-GGCG-UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 48367 0.69 0.265517
Target:  5'- -cCCGG-GGCCGCCCCG-CGgGGCg- -3'
miRNA:   3'- caGGCCgCCGGUGGGGCgGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 65351 0.69 0.296476
Target:  5'- uUCCGGUGGUgGCCgCGCUGC-GCa- -3'
miRNA:   3'- cAGGCCGCCGgUGGgGCGGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 150166 0.69 0.289432
Target:  5'- uUCCGGgGGCgggccgcCGCCCCcuCCGCGGCg- -3'
miRNA:   3'- cAGGCCgCCG-------GUGGGGc-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 134961 0.69 0.283767
Target:  5'- -gCC-GCGGCCACCCaUGCCGCGuGCc- -3'
miRNA:   3'- caGGcCGCCGGUGGG-GCGGCGU-CGag -5'
5510 3' -66.6 NC_001798.1 + 2038 0.69 0.267298
Target:  5'- -gCCGGUugcccagGGCCGCcagcaggcaggacagCCCGCCGC-GCUCg -3'
miRNA:   3'- caGGCCG-------CCGGUG---------------GGGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 153184 0.69 0.271492
Target:  5'- -gCCGGCcgaGGCCGCCCuCGCCG--GUUCa -3'
miRNA:   3'- caGGCCG---CCGGUGGG-GCGGCguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 15553 0.69 0.283767
Target:  5'- -cCCGGCcccgGGCguuGCCgCCGCCGCGGCg- -3'
miRNA:   3'- caGGCCG----CCGg--UGG-GGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 104541 0.69 0.290067
Target:  5'- cGUCgCGGUgGGCCACgUCGUCGgGGUUCa -3'
miRNA:   3'- -CAG-GCCG-CCGGUGgGGCGGCgUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.