Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 130140 | 0.69 | 0.290067 |
Target: 5'- -gUCGGgGGCCACUUCGUCGUAGaUCg -3' miRNA: 3'- caGGCCgCCGGUGGGGCGGCGUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 58005 | 0.69 | 0.259648 |
Target: 5'- --aUGGCGaUCACCCCGaCCGCcGGCUCg -3' miRNA: 3'- cagGCCGCcGGUGGGGC-GGCG-UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2038 | 0.69 | 0.267298 |
Target: 5'- -gCCGGUugcccagGGCCGCcagcaggcaggacagCCCGCCGC-GCUCg -3' miRNA: 3'- caGGCCG-------CCGGUG---------------GGGCGGCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 83731 | 0.69 | 0.283767 |
Target: 5'- -aCCGcccaccagauaGCGGCCcccagaaacaGCCCCGCCGcCAGCa- -3' miRNA: 3'- caGGC-----------CGCCGG----------UGGGGCGGC-GUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 70947 | 0.68 | 0.309623 |
Target: 5'- --gCGGUGGUC-CCgCCGCCGCuGCUg -3' miRNA: 3'- cagGCCGCCGGuGG-GGCGGCGuCGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 103001 | 0.68 | 0.308956 |
Target: 5'- -gCCGGgGGCCcaggugcGCCCgGCCaGCgcgAGCUCg -3' miRNA: 3'- caGGCCgCCGG-------UGGGgCGG-CG---UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 150362 | 0.68 | 0.302995 |
Target: 5'- cGUCCaccggcacggcgGGCGGCgCggGCCCgGCCGCGuccgcGCUCg -3' miRNA: 3'- -CAGG------------CCGCCG-G--UGGGgCGGCGU-----CGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 105270 | 0.68 | 0.302995 |
Target: 5'- aUCCGccucuuCGGCCGCggCCGCCGCGGuCUCc -3' miRNA: 3'- cAGGCc-----GCCGGUGg-GGCGGCGUC-GAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 93929 | 0.68 | 0.302995 |
Target: 5'- -aCCGcGCGGCCACCgaGCgCGUcauggccgAGCUCg -3' miRNA: 3'- caGGC-CGCCGGUGGggCG-GCG--------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 121273 | 0.68 | 0.302995 |
Target: 5'- uGUCCGcccucgugcGCGGCCGCCCCGaCgGUggGGCg- -3' miRNA: 3'- -CAGGC---------CGCCGGUGGGGC-GgCG--UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 54435 | 0.68 | 0.301682 |
Target: 5'- -cCCGGCGcgacaacGCaC-CCCCGCCGCucccccgGGCUCg -3' miRNA: 3'- caGGCCGC-------CG-GuGGGGCGGCG-------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 129532 | 0.68 | 0.309623 |
Target: 5'- cUCCGGgGcGCgGCCCUGCUGCuGC-Cg -3' miRNA: 3'- cAGGCCgC-CGgUGGGGCGGCGuCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 137425 | 0.68 | 0.309623 |
Target: 5'- gGUCCGGgacCGGgacCCGCCCCGCggggaCGC-GCUCg -3' miRNA: 3'- -CAGGCC---GCC---GGUGGGGCG-----GCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 115610 | 0.68 | 0.315683 |
Target: 5'- gGUCCGGUgGGUCGCCgagugccagaugaCCGCggaGCAGUUCa -3' miRNA: 3'- -CAGGCCG-CCGGUGG-------------GGCGg--CGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 191 | 0.68 | 0.316362 |
Target: 5'- uUCCcGCGGgCGCCCC-CgCGCGGCUUu -3' miRNA: 3'- cAGGcCGCCgGUGGGGcG-GCGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 106084 | 0.68 | 0.316362 |
Target: 5'- gGUCUGGCGGUCGCggcgaCCCGgCGCcGCg- -3' miRNA: 3'- -CAGGCCGCCGGUG-----GGGCgGCGuCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 154529 | 0.68 | 0.316362 |
Target: 5'- uUCCcGCGGgCGCCCC-CgCGCGGCUUu -3' miRNA: 3'- cAGGcCGCCgGUGGGGcG-GCGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 53631 | 0.68 | 0.32321 |
Target: 5'- -gCCGccGCGGCCAaguaCgCCGCCGCGGUg- -3' miRNA: 3'- caGGC--CGCCGGUg---G-GGCGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 4028 | 0.68 | 0.32321 |
Target: 5'- cGUCgCGGcCGGCCACCgCCGCgcgggcccgGCGGCg- -3' miRNA: 3'- -CAG-GCC-GCCGGUGG-GGCGg--------CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 115817 | 0.68 | 0.32321 |
Target: 5'- uGUCCGGUGGCguuucgugaCGCCCgggGCCuGgAGCUCg -3' miRNA: 3'- -CAGGCCGCCG---------GUGGGg--CGG-CgUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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