Results 121 - 140 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 43879 | 0.67 | 0.381928 |
Target: 5'- -cCCaGCGGCCgcgGCCCCGCgggaGUacuGGCUCu -3' miRNA: 3'- caGGcCGCCGG---UGGGGCGg---CG---UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2566 | 0.67 | 0.388964 |
Target: 5'- ---gGGCGGCCGCggggcggggggcgUCCG-CGCGGCUCu -3' miRNA: 3'- caggCCGCCGGUG-------------GGGCgGCGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 53449 | 0.67 | 0.389751 |
Target: 5'- uGUCgGGCGGCCAgCUgaGCCGC-GC-Ca -3' miRNA: 3'- -CAGgCCGCCGGUgGGg-CGGCGuCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31848 | 0.67 | 0.389751 |
Target: 5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3' miRNA: 3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 104665 | 0.67 | 0.389751 |
Target: 5'- -cCCGugcucguaGCGGCCGCCggCCGCCGCGaacugcGCUUu -3' miRNA: 3'- caGGC--------CGCCGGUGG--GGCGGCGU------CGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 75273 | 0.67 | 0.392118 |
Target: 5'- gGUCCGGCucgcggcgcgcgauGCCGCCCUggcccgcgaggugGCCGCguguucgcAGCUCa -3' miRNA: 3'- -CAGGCCGc-------------CGGUGGGG-------------CGGCG--------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 123817 | 0.67 | 0.351701 |
Target: 5'- -cCCGGaGGaaacccCCgACCCCGCCGCcgaacAGCUCg -3' miRNA: 3'- caGGCCgCC------GG-UGGGGCGGCG-----UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31240 | 0.67 | 0.3666 |
Target: 5'- --gCGGCGG-CGCCCCGuuGCgGGCg- -3' miRNA: 3'- cagGCCGCCgGUGGGGCggCG-UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31205 | 0.67 | 0.3666 |
Target: 5'- -aCCGGCGcccccuGgCGCCCCGCggaGCAGCa- -3' miRNA: 3'- caGGCCGC------CgGUGGGGCGg--CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 109360 | 0.67 | 0.3666 |
Target: 5'- -gCCGGCcuGGCCGCCCgGggaGCAGCg- -3' miRNA: 3'- caGGCCG--CCGGUGGGgCgg-CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 40016 | 0.67 | 0.351701 |
Target: 5'- cGUCgCGGCGGCCcuCCUCGUC-CcGCUCc -3' miRNA: 3'- -CAG-GCCGCCGGu-GGGGCGGcGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 115529 | 0.67 | 0.351701 |
Target: 5'- cGUCgCGGCcccGGCCgGCCCCGgCGCGGaCa- -3' miRNA: 3'- -CAG-GCCG---CCGG-UGGGGCgGCGUC-Gag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 80893 | 0.67 | 0.359097 |
Target: 5'- uGUCUGGCGGCgCAgcuCCCgCGCCugucgGC-GCUCa -3' miRNA: 3'- -CAGGCCGCCG-GU---GGG-GCGG-----CGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2853 | 0.67 | 0.359097 |
Target: 5'- --aCGGCGGCCacggcgGCCUCGCUGCcGC-Cg -3' miRNA: 3'- cagGCCGCCGG------UGGGGCGGCGuCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 4750 | 0.67 | 0.359097 |
Target: 5'- -gCCGG-GGCCGCCUCGUCGgcauCGGCaUCg -3' miRNA: 3'- caGGCCgCCGGUGGGGCGGC----GUCG-AG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 122368 | 0.67 | 0.359097 |
Target: 5'- ---gGGCGGgcgacgcgcCCGCCCC-CCGCGGCUg -3' miRNA: 3'- caggCCGCC---------GGUGGGGcGGCGUCGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2093 | 0.67 | 0.351701 |
Target: 5'- cUCCGGgGGgggcCCGcCCCCGgCGCGGCcCg -3' miRNA: 3'- cAGGCCgCC----GGU-GGGGCgGCGUCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2439 | 0.67 | 0.351701 |
Target: 5'- -cCCGGCGGCUggcggcGCCagCCGCCcuGCGGgUCg -3' miRNA: 3'- caGGCCGCCGG------UGG--GGCGG--CGUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 27105 | 0.67 | 0.3666 |
Target: 5'- gGUCaGGUGGCCcgaGCCCCcCCGCAGg-- -3' miRNA: 3'- -CAGgCCGCCGG---UGGGGcGGCGUCgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 92497 | 0.67 | 0.3666 |
Target: 5'- uUCaCGGCGGCCGCCaCCugGCCccCAGCa- -3' miRNA: 3'- cAG-GCCGCCGGUGG-GG--CGGc-GUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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