miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 150166 0.69 0.289432
Target:  5'- uUCCGGgGGCgggccgcCGCCCCcuCCGCGGCg- -3'
miRNA:   3'- cAGGCCgCCG-------GUGGGGc-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 104541 0.69 0.290067
Target:  5'- cGUCgCGGUgGGCCACgUCGUCGgGGUUCa -3'
miRNA:   3'- -CAG-GCCG-CCGGUGgGGCGGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 130140 0.69 0.290067
Target:  5'- -gUCGGgGGCCACUUCGUCGUAGaUCg -3'
miRNA:   3'- caGGCCgCCGGUGGGGCGGCGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 65351 0.69 0.296476
Target:  5'- uUCCGGUGGUgGCCgCGCUGC-GCa- -3'
miRNA:   3'- cAGGCCGCCGgUGGgGCGGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 54435 0.68 0.301682
Target:  5'- -cCCGGCGcgacaacGCaC-CCCCGCCGCucccccgGGCUCg -3'
miRNA:   3'- caGGCCGC-------CG-GuGGGGCGGCG-------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 121273 0.68 0.302995
Target:  5'- uGUCCGcccucgugcGCGGCCGCCCCGaCgGUggGGCg- -3'
miRNA:   3'- -CAGGC---------CGCCGGUGGGGC-GgCG--UCGag -5'
5510 3' -66.6 NC_001798.1 + 93929 0.68 0.302995
Target:  5'- -aCCGcGCGGCCACCgaGCgCGUcauggccgAGCUCg -3'
miRNA:   3'- caGGC-CGCCGGUGGggCG-GCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 105270 0.68 0.302995
Target:  5'- aUCCGccucuuCGGCCGCggCCGCCGCGGuCUCc -3'
miRNA:   3'- cAGGCc-----GCCGGUGg-GGCGGCGUC-GAG- -5'
5510 3' -66.6 NC_001798.1 + 150362 0.68 0.302995
Target:  5'- cGUCCaccggcacggcgGGCGGCgCggGCCCgGCCGCGuccgcGCUCg -3'
miRNA:   3'- -CAGG------------CCGCCG-G--UGGGgCGGCGU-----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 103001 0.68 0.308956
Target:  5'- -gCCGGgGGCCcaggugcGCCCgGCCaGCgcgAGCUCg -3'
miRNA:   3'- caGGCCgCCGG-------UGGGgCGG-CG---UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 137425 0.68 0.309623
Target:  5'- gGUCCGGgacCGGgacCCGCCCCGCggggaCGC-GCUCg -3'
miRNA:   3'- -CAGGCC---GCC---GGUGGGGCG-----GCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 129532 0.68 0.309623
Target:  5'- cUCCGGgGcGCgGCCCUGCUGCuGC-Cg -3'
miRNA:   3'- cAGGCCgC-CGgUGGGGCGGCGuCGaG- -5'
5510 3' -66.6 NC_001798.1 + 70947 0.68 0.309623
Target:  5'- --gCGGUGGUC-CCgCCGCCGCuGCUg -3'
miRNA:   3'- cagGCCGCCGGuGG-GGCGGCGuCGAg -5'
5510 3' -66.6 NC_001798.1 + 115610 0.68 0.315683
Target:  5'- gGUCCGGUgGGUCGCCgagugccagaugaCCGCggaGCAGUUCa -3'
miRNA:   3'- -CAGGCCG-CCGGUGG-------------GGCGg--CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 191 0.68 0.316362
Target:  5'- uUCCcGCGGgCGCCCC-CgCGCGGCUUu -3'
miRNA:   3'- cAGGcCGCCgGUGGGGcG-GCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 106084 0.68 0.316362
Target:  5'- gGUCUGGCGGUCGCggcgaCCCGgCGCcGCg- -3'
miRNA:   3'- -CAGGCCGCCGGUG-----GGGCgGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 154529 0.68 0.316362
Target:  5'- uUCCcGCGGgCGCCCC-CgCGCGGCUUu -3'
miRNA:   3'- cAGGcCGCCgGUGGGGcG-GCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 25146 0.68 0.316362
Target:  5'- -cCCcGCGGCCGCCCCucCCGCGGg-- -3'
miRNA:   3'- caGGcCGCCGGUGGGGc-GGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 53631 0.68 0.32321
Target:  5'- -gCCGccGCGGCCAaguaCgCCGCCGCGGUg- -3'
miRNA:   3'- caGGC--CGCCGGUg---G-GGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 4028 0.68 0.32321
Target:  5'- cGUCgCGGcCGGCCACCgCCGCgcgggcccgGCGGCg- -3'
miRNA:   3'- -CAG-GCC-GCCGGUGG-GGCGg--------CGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.