Results 141 - 160 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 31848 | 0.67 | 0.389751 |
Target: 5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3' miRNA: 3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 75273 | 0.67 | 0.392118 |
Target: 5'- gGUCCGGCucgcggcgcgcgauGCCGCCCUggcccgcgaggugGCCGCguguucgcAGCUCa -3' miRNA: 3'- -CAGGCCGc-------------CGGUGGGG-------------CGGCG--------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2182 | 0.66 | 0.395288 |
Target: 5'- gGUCgGGCaccuggcgcauccaGGCCGCCgCGCggCGCAGCg- -3' miRNA: 3'- -CAGgCCG--------------CCGGUGGgGCG--GCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 29794 | 0.66 | 0.397677 |
Target: 5'- cUCCcgGGCGGaCCccgGCCCCgagcggccGCCGCGGCa- -3' miRNA: 3'- cAGG--CCGCC-GG---UGGGG--------CGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 91855 | 0.66 | 0.397677 |
Target: 5'- -gCCGuacauauacCGGCCGCCCCgGCCGagcauaccCAGCUCu -3' miRNA: 3'- caGGCc--------GCCGGUGGGG-CGGC--------GUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 71849 | 0.66 | 0.403287 |
Target: 5'- cGUCgGGCGccuaGCCACgCCCccucgguucaccugGCCGCGGC-Ca -3' miRNA: 3'- -CAGgCCGC----CGGUG-GGG--------------CGGCGUCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31878 | 0.66 | 0.404899 |
Target: 5'- --gCGGCGGcCCGCCCCcggaagaGgCGCGGgUCg -3' miRNA: 3'- cagGCCGCC-GGUGGGG-------CgGCGUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 153253 | 0.66 | 0.405707 |
Target: 5'- -aCCcGCGcGCCGCCgCCGCCGCcucCUCc -3' miRNA: 3'- caGGcCGC-CGGUGG-GGCGGCGuc-GAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 152198 | 0.66 | 0.405707 |
Target: 5'- -cCCGGgGGUCGCCCUcucaccguGCCGgGGgUCu -3' miRNA: 3'- caGGCCgCCGGUGGGG--------CGGCgUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 75217 | 0.66 | 0.405707 |
Target: 5'- -cCCGGC-GCCGaCCUGgCGCAGCUg -3' miRNA: 3'- caGGCCGcCGGUgGGGCgGCGUCGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 146497 | 0.66 | 0.405707 |
Target: 5'- -gCCGGgcCGGCaaCGCCCCgcgccgGCCGCGGCg- -3' miRNA: 3'- caGGCC--GCCG--GUGGGG------CGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 24940 | 0.66 | 0.405707 |
Target: 5'- cUCC-GCcGCCGCgCCGCCGCGgaccuGCUCu -3' miRNA: 3'- cAGGcCGcCGGUGgGGCGGCGU-----CGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 123941 | 0.66 | 0.405707 |
Target: 5'- gGUCCGGgGGCCugguggcaccuCCCCggcgGCCGCAuauacuGCUg -3' miRNA: 3'- -CAGGCCgCCGGu----------GGGG----CGGCGU------CGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 3509 | 0.66 | 0.411387 |
Target: 5'- --aCGGCGGCCgccacgugcgccagGCCCCaGCCGaAGCg- -3' miRNA: 3'- cagGCCGCCGG--------------UGGGG-CGGCgUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 3293 | 0.66 | 0.413837 |
Target: 5'- -gCCGGCGa-CGCCgCCGCCGaCGGCa- -3' miRNA: 3'- caGGCCGCcgGUGG-GGCGGC-GUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 25967 | 0.66 | 0.413837 |
Target: 5'- -gCCGGCGGCgCgggACCUgCGCCGCAccguGCUg -3' miRNA: 3'- caGGCCGCCG-G---UGGG-GCGGCGU----CGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 86834 | 0.66 | 0.413837 |
Target: 5'- cUCCGGCucccGGCCcggGCCCgGCCGCgacaagacccGGCg- -3' miRNA: 3'- cAGGCCG----CCGG---UGGGgCGGCG----------UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 61877 | 0.66 | 0.413837 |
Target: 5'- -cCCGGCGGCCcccucgggcgcGCCCUcgaaGCCgGCccugcgccuGGCUCa -3' miRNA: 3'- caGGCCGCCGG-----------UGGGG----CGG-CG---------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 60163 | 0.66 | 0.422067 |
Target: 5'- -gUUGGCGGCCGCuuggCCCGCCuucuuCAGCg- -3' miRNA: 3'- caGGCCGCCGGUG----GGGCGGc----GUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 66859 | 0.66 | 0.422067 |
Target: 5'- uUCCGGgGaGUCGCCggggCGCCGgGGCUUg -3' miRNA: 3'- cAGGCCgC-CGGUGGg---GCGGCgUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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