miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 47243 0.66 0.447336
Target:  5'- cGUUgGGCGGCC-CCCgGCCuuuGCUUc -3'
miRNA:   3'- -CAGgCCGCCGGuGGGgCGGcguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 47650 0.68 0.330168
Target:  5'- aGUCCGcGCGaCgACuUCCGCCGCGGCg- -3'
miRNA:   3'- -CAGGC-CGCcGgUG-GGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 47814 0.68 0.329468
Target:  5'- cGUCgCGGgcucucaCGGCCccgGCCCCGCgCGC-GCUCc -3'
miRNA:   3'- -CAG-GCC-------GCCGG---UGGGGCG-GCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 47951 0.74 0.131439
Target:  5'- -cCCGGCGaCCgACCCCGcCCGCGGCa- -3'
miRNA:   3'- caGGCCGCcGG-UGGGGC-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 48170 0.71 0.192693
Target:  5'- -cCUGGCGGCCACgCaCGCC-CGGCUg -3'
miRNA:   3'- caGGCCGCCGGUGgG-GCGGcGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 48367 0.69 0.265517
Target:  5'- -cCCGG-GGCCGCCCCG-CGgGGCg- -3'
miRNA:   3'- caGGCCgCCGGUGGGGCgGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 51931 0.71 0.216453
Target:  5'- --gUGGgGGCCGCCgCCguGCCGCuGCUCa -3'
miRNA:   3'- cagGCCgCCGGUGG-GG--CGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 52519 0.72 0.167227
Target:  5'- --gCGGCGGCCGCgCgCGCCGUgcuggcgacggGGCUCa -3'
miRNA:   3'- cagGCCGCCGGUGgG-GCGGCG-----------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 53449 0.67 0.389751
Target:  5'- uGUCgGGCGGCCAgCUgaGCCGC-GC-Ca -3'
miRNA:   3'- -CAGgCCGCCGGUgGGg-CGGCGuCGaG- -5'
5510 3' -66.6 NC_001798.1 + 53631 0.68 0.32321
Target:  5'- -gCCGccGCGGCCAaguaCgCCGCCGCGGUg- -3'
miRNA:   3'- caGGC--CGCCGGUg---G-GGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 54435 0.68 0.301682
Target:  5'- -cCCGGCGcgacaacGCaC-CCCCGCCGCucccccgGGCUCg -3'
miRNA:   3'- caGGCCGC-------CG-GuGGGGCGGCG-------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 54664 0.76 0.088597
Target:  5'- -gCCGGCaGCCGCggcgcgCCCGCuCGCGGCUCa -3'
miRNA:   3'- caGGCCGcCGGUG------GGGCG-GCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 55009 0.71 0.211508
Target:  5'- -gCCGGCggGGCCGCCCUGCCGggagacgcccCGGaCUCc -3'
miRNA:   3'- caGGCCG--CCGGUGGGGCGGC----------GUC-GAG- -5'
5510 3' -66.6 NC_001798.1 + 55770 0.68 0.330168
Target:  5'- -gCCGGCGcGCUgcaGCCgCCGaCCGCcuGCUCg -3'
miRNA:   3'- caGGCCGC-CGG---UGG-GGC-GGCGu-CGAG- -5'
5510 3' -66.6 NC_001798.1 + 56244 0.75 0.113218
Target:  5'- -aCCGGCGGCCgggcccgGCCCCGgaguuaCCGCAGC-Cg -3'
miRNA:   3'- caGGCCGCCGG-------UGGGGC------GGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 57741 0.73 0.151966
Target:  5'- -aCCGGUGGgCGCgCCCGgCGCAGCg- -3'
miRNA:   3'- caGGCCGCCgGUG-GGGCgGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 58005 0.69 0.259648
Target:  5'- --aUGGCGaUCACCCCGaCCGCcGGCUCg -3'
miRNA:   3'- cagGCCGCcGGUGGGGC-GGCG-UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 58037 0.68 0.344414
Target:  5'- aUCC-GCGGCCGcaccagcacCCCCGCCGCAa--- -3'
miRNA:   3'- cAGGcCGCCGGU---------GGGGCGGCGUcgag -5'
5510 3' -66.6 NC_001798.1 + 58476 0.68 0.344414
Target:  5'- -gCCGuGCGGCC-CCgUCGCCGCAGa-- -3'
miRNA:   3'- caGGC-CGCCGGuGG-GGCGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 59837 0.68 0.344414
Target:  5'- -gCC-GCGGUCGCCCgCGUC-CGGCUCg -3'
miRNA:   3'- caGGcCGCCGGUGGG-GCGGcGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.