miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 60163 0.66 0.422067
Target:  5'- -gUUGGCGGCCGCuuggCCCGCCuucuuCAGCg- -3'
miRNA:   3'- caGGCCGCCGGUG----GGGCGGc----GUCGag -5'
5510 3' -66.6 NC_001798.1 + 61877 0.66 0.413837
Target:  5'- -cCCGGCGGCCcccucgggcgcGCCCUcgaaGCCgGCccugcgccuGGCUCa -3'
miRNA:   3'- caGGCCGCCGG-----------UGGGG----CGG-CG---------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 64267 0.68 0.337236
Target:  5'- -gCCGGCGaaCACCCCGCUGUuGgUCg -3'
miRNA:   3'- caGGCCGCcgGUGGGGCGGCGuCgAG- -5'
5510 3' -66.6 NC_001798.1 + 65351 0.69 0.296476
Target:  5'- uUCCGGUGGUgGCCgCGCUGC-GCa- -3'
miRNA:   3'- cAGGCCGCCGgUGGgGCGGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 66859 0.66 0.422067
Target:  5'- uUCCGGgGaGUCGCCggggCGCCGgGGCUUg -3'
miRNA:   3'- cAGGCCgC-CGGUGGg---GCGGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 67328 0.66 0.447336
Target:  5'- --gCGGUucGGCCAuCCCCGCCgGCuGCg- -3'
miRNA:   3'- cagGCCG--CCGGU-GGGGCGG-CGuCGag -5'
5510 3' -66.6 NC_001798.1 + 68226 0.69 0.283767
Target:  5'- ---aGGCccGCCACCCCGCCGCGcGC-Ca -3'
miRNA:   3'- caggCCGc-CGGUGGGGCGGCGU-CGaG- -5'
5510 3' -66.6 NC_001798.1 + 70947 0.68 0.309623
Target:  5'- --gCGGUGGUC-CCgCCGCCGCuGCUg -3'
miRNA:   3'- cagGCCGCCGGuGG-GGCGGCGuCGAg -5'
5510 3' -66.6 NC_001798.1 + 71205 0.74 0.122162
Target:  5'- cGUCCGGCcGUCACcggCCUGCUGCAGCUa -3'
miRNA:   3'- -CAGGCCGcCGGUG---GGGCGGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 71849 0.66 0.403287
Target:  5'- cGUCgGGCGccuaGCCACgCCCccucgguucaccugGCCGCGGC-Ca -3'
miRNA:   3'- -CAGgCCGC----CGGUG-GGG--------------CGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 74410 0.72 0.17956
Target:  5'- -gCCGGCGGaCCugaCCGCCGCGGCc- -3'
miRNA:   3'- caGGCCGCC-GGuggGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 75217 0.66 0.405707
Target:  5'- -cCCGGC-GCCGaCCUGgCGCAGCUg -3'
miRNA:   3'- caGGCCGcCGGUgGGGCgGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 75273 0.67 0.392118
Target:  5'- gGUCCGGCucgcggcgcgcgauGCCGCCCUggcccgcgaggugGCCGCguguucgcAGCUCa -3'
miRNA:   3'- -CAGGCCGc-------------CGGUGGGG-------------CGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 75457 0.71 0.197255
Target:  5'- -gCCggGGUGGCCgGCCCgGCCGCGGCc- -3'
miRNA:   3'- caGG--CCGCCGG-UGGGgCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 76373 0.68 0.347316
Target:  5'- -cCUGGCGGCCuggcucucgguccugACCgaCGCCGCgacccaggGGCUCa -3'
miRNA:   3'- caGGCCGCCGG---------------UGGg-GCGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 78285 0.71 0.216453
Target:  5'- -cCUGGCGGCCGCCgCGgagcagauauCCGCGGCcCg -3'
miRNA:   3'- caGGCCGCCGGUGGgGC----------GGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 78348 0.72 0.17956
Target:  5'- gGUCCGGaccggGGUCACCCUGCCGUgucccAGCg- -3'
miRNA:   3'- -CAGGCCg----CCGGUGGGGCGGCG-----UCGag -5'
5510 3' -66.6 NC_001798.1 + 80893 0.67 0.359097
Target:  5'- uGUCUGGCGGCgCAgcuCCCgCGCCugucgGC-GCUCa -3'
miRNA:   3'- -CAGGCCGCCG-GU---GGG-GCGG-----CGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 81810 0.72 0.175362
Target:  5'- -gCCGGCacuccccgccccGGUCGCCCCGUCGCcGCUUc -3'
miRNA:   3'- caGGCCG------------CCGGUGGGGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 82005 0.77 0.080168
Target:  5'- -cCCGGgGGCgACCgCCGCCGCGGC-Cg -3'
miRNA:   3'- caGGCCgCCGgUGG-GGCGGCGUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.