miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 82164 0.72 0.175362
Target:  5'- -gCCGaccacGCGGCCGCgguuUCCGCCGCAGCg- -3'
miRNA:   3'- caGGC-----CGCCGGUG----GGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 83731 0.69 0.283767
Target:  5'- -aCCGcccaccagauaGCGGCCcccagaaacaGCCCCGCCGcCAGCa- -3'
miRNA:   3'- caGGC-----------CGCCGG----------UGGGGCGGC-GUCGag -5'
5510 3' -66.6 NC_001798.1 + 84604 0.66 0.430395
Target:  5'- -cCCGGU-GCCgguGCCCCGCCGaAGCg- -3'
miRNA:   3'- caGGCCGcCGG---UGGGGCGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 85354 0.66 0.422067
Target:  5'- --aCGG-GGCC-CUUCGCCGCGGCg- -3'
miRNA:   3'- cagGCCgCCGGuGGGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 86834 0.66 0.413837
Target:  5'- cUCCGGCucccGGCCcggGCCCgGCCGCgacaagacccGGCg- -3'
miRNA:   3'- cAGGCCG----CCGG---UGGGgCGGCG----------UCGag -5'
5510 3' -66.6 NC_001798.1 + 87159 0.7 0.248229
Target:  5'- -aUCGGgGGCUgcuGCCCCGCgUGCAGCg- -3'
miRNA:   3'- caGGCCgCCGG---UGGGGCG-GCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 91110 0.66 0.422067
Target:  5'- -cCCGGUGcGCUGCUCCGCgGgGGCg- -3'
miRNA:   3'- caGGCCGC-CGGUGGGGCGgCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 91855 0.66 0.397677
Target:  5'- -gCCGuacauauacCGGCCGCCCCgGCCGagcauaccCAGCUCu -3'
miRNA:   3'- caGGCc--------GCCGGUGGGG-CGGC--------GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 92497 0.67 0.3666
Target:  5'- uUCaCGGCGGCCGCCaCCugGCCccCAGCa- -3'
miRNA:   3'- cAG-GCCGCCGGUGG-GG--CGGc-GUCGag -5'
5510 3' -66.6 NC_001798.1 + 93929 0.68 0.302995
Target:  5'- -aCCGcGCGGCCACCgaGCgCGUcauggccgAGCUCg -3'
miRNA:   3'- caGGC-CGCCGGUGGggCG-GCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 94189 0.72 0.188225
Target:  5'- -aCCuGCgGGCCGugccCCCUGCUGCAGCUCc -3'
miRNA:   3'- caGGcCG-CCGGU----GGGGCGGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 94438 0.7 0.231883
Target:  5'- --aCGGcCGGCCAgacggcCCCCGCCgagaGCAGCUUc -3'
miRNA:   3'- cagGCC-GCCGGU------GGGGCGG----CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 94989 0.71 0.197255
Target:  5'- --gCGGCGGCCgccuggGCCCCGCaggGCGGCg- -3'
miRNA:   3'- cagGCCGCCGG------UGGGGCGg--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 96169 0.73 0.151966
Target:  5'- --aUGGCGGCCgcGCCCCcgGCCGCGGUUUc -3'
miRNA:   3'- cagGCCGCCGG--UGGGG--CGGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 97005 0.7 0.237229
Target:  5'- -gCCGGCccGCCG-CCCGCCGaUAGCUCu -3'
miRNA:   3'- caGGCCGc-CGGUgGGGCGGC-GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 97279 0.71 0.211508
Target:  5'- cGUUCGGgGGCCACCUgGCgGC-GCUg -3'
miRNA:   3'- -CAGGCCgCCGGUGGGgCGgCGuCGAg -5'
5510 3' -66.6 NC_001798.1 + 98268 0.66 0.438819
Target:  5'- gGUgCGGgGagcuugaguugcGCCGCCCCGaCUGCAGC-Cg -3'
miRNA:   3'- -CAgGCCgC------------CGGUGGGGC-GGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 98609 0.74 0.128277
Target:  5'- -cCCGGCGGCCcCCCgCGCCucggGCGGCg- -3'
miRNA:   3'- caGGCCGCCGGuGGG-GCGG----CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 102359 0.74 0.119208
Target:  5'- cUCCGGCGGCCGCcggaagcccaCCCGCCuggcggucgGCGGCg- -3'
miRNA:   3'- cAGGCCGCCGGUG----------GGGCGG---------CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 102520 0.7 0.237229
Target:  5'- uGUCCGuaGGCCACCguCC-CCGCGGC-Cg -3'
miRNA:   3'- -CAGGCcgCCGGUGG--GGcGGCGUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.