miRNA display CGI


Results 121 - 140 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 102891 0.75 0.108043
Target:  5'- uGUCCGGCgaucccGGCCugC-CGCCGCcGCUCg -3'
miRNA:   3'- -CAGGCCG------CCGGugGgGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 103001 0.68 0.308956
Target:  5'- -gCCGGgGGCCcaggugcGCCCgGCCaGCgcgAGCUCg -3'
miRNA:   3'- caGGCCgCCGG-------UGGGgCGG-CG---UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 103316 0.66 0.438819
Target:  5'- -gCUGGCGGCCGUCUCGaggaCGC-GCUCc -3'
miRNA:   3'- caGGCCGCCGGUGGGGCg---GCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 104150 0.7 0.226639
Target:  5'- -gCCaGUGGCCGCCCCGCCugGGCg- -3'
miRNA:   3'- caGGcCGCCGGUGGGGCGGcgUCGag -5'
5510 3' -66.6 NC_001798.1 + 104172 0.67 0.373445
Target:  5'- cGUCCaggcacagGGCGGCCAgCCCCGgaaacaaCUGgguCAGCUCg -3'
miRNA:   3'- -CAGG--------CCGCCGGU-GGGGC-------GGC---GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 104452 0.66 0.422067
Target:  5'- -gUUGGCGGUCG-CCCGCaGCAGCg- -3'
miRNA:   3'- caGGCCGCCGGUgGGGCGgCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 104541 0.69 0.290067
Target:  5'- cGUCgCGGUgGGCCACgUCGUCGgGGUUCa -3'
miRNA:   3'- -CAG-GCCG-CCGGUGgGGCGGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 104665 0.67 0.389751
Target:  5'- -cCCGugcucguaGCGGCCGCCggCCGCCGCGaacugcGCUUu -3'
miRNA:   3'- caGGC--------CGCCGGUGG--GGCGGCGU------CGAG- -5'
5510 3' -66.6 NC_001798.1 + 105215 0.71 0.201911
Target:  5'- --aCGGC-GCUGCCCCGuCCGCAGCg- -3'
miRNA:   3'- cagGCCGcCGGUGGGGC-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 105270 0.68 0.302995
Target:  5'- aUCCGccucuuCGGCCGCggCCGCCGCGGuCUCc -3'
miRNA:   3'- cAGGCc-----GCCGGUGg-GGCGGCGUC-GAG- -5'
5510 3' -66.6 NC_001798.1 + 105405 0.66 0.438819
Target:  5'- cUCCaG-GGCCGCCgCgGCCGCGGUg- -3'
miRNA:   3'- cAGGcCgCCGGUGG-GgCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 106084 0.68 0.316362
Target:  5'- gGUCUGGCGGUCGCggcgaCCCGgCGCcGCg- -3'
miRNA:   3'- -CAGGCCGCCGGUG-----GGGCgGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 109071 0.72 0.188225
Target:  5'- uGUCCuGGgGGCCccgACgCCCGCCGacaaCGGCUCg -3'
miRNA:   3'- -CAGG-CCgCCGG---UG-GGGCGGC----GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 109360 0.67 0.3666
Target:  5'- -gCCGGCcuGGCCGCCCgGggaGCAGCg- -3'
miRNA:   3'- caGGCCG--CCGGUGGGgCgg-CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 109431 0.66 0.422067
Target:  5'- -cCCGGCGGCC-CgCCUGCgGCuggaGGCg- -3'
miRNA:   3'- caGGCCGCCGGuG-GGGCGgCG----UCGag -5'
5510 3' -66.6 NC_001798.1 + 112197 0.68 0.344414
Target:  5'- cGUCCcGCaGGCCGCgCUGgCGgAGCUCg -3'
miRNA:   3'- -CAGGcCG-CCGGUGgGGCgGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 114100 0.71 0.216453
Target:  5'- -gCC-GCGGCCAUCCUGCCcacCGGCUCc -3'
miRNA:   3'- caGGcCGCCGGUGGGGCGGc--GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 114829 0.66 0.430395
Target:  5'- cGUCC-GUGGCCguGCCCCGCCugacGCAcGC-Cg -3'
miRNA:   3'- -CAGGcCGCCGG--UGGGGCGG----CGU-CGaG- -5'
5510 3' -66.6 NC_001798.1 + 115529 0.67 0.351701
Target:  5'- cGUCgCGGCcccGGCCgGCCCCGgCGCGGaCa- -3'
miRNA:   3'- -CAG-GCCG---CCGG-UGGGGCgGCGUC-Gag -5'
5510 3' -66.6 NC_001798.1 + 115610 0.68 0.315683
Target:  5'- gGUCCGGUgGGUCGCCgagugccagaugaCCGCggaGCAGUUCa -3'
miRNA:   3'- -CAGGCCG-CCGGUGG-------------GGCGg--CGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.