miRNA display CGI


Results 141 - 160 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 115817 0.68 0.32321
Target:  5'- uGUCCGGUGGCguuucgugaCGCCCgggGCCuGgAGCUCg -3'
miRNA:   3'- -CAGGCCGCCG---------GUGGGg--CGG-CgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 117546 0.66 0.438819
Target:  5'- -cCCGGUcuuuGGCUgcGCCCagguGCCGCGGCg- -3'
miRNA:   3'- caGGCCG----CCGG--UGGGg---CGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 121273 0.68 0.302995
Target:  5'- uGUCCGcccucgugcGCGGCCGCCCCGaCgGUggGGCg- -3'
miRNA:   3'- -CAGGC---------CGCCGGUGGGGC-GgCG--UCGag -5'
5510 3' -66.6 NC_001798.1 + 121694 0.7 0.248229
Target:  5'- -gCUGGgGGCCGCggcuCCCGCCGCcGCg- -3'
miRNA:   3'- caGGCCgCCGGUG----GGGCGGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 122368 0.67 0.359097
Target:  5'- ---gGGCGGgcgacgcgcCCGCCCC-CCGCGGCUg -3'
miRNA:   3'- caggCCGCC---------GGUGGGGcGGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 123817 0.67 0.351701
Target:  5'- -cCCGGaGGaaacccCCgACCCCGCCGCcgaacAGCUCg -3'
miRNA:   3'- caGGCCgCC------GG-UGGGGCGGCG-----UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 123941 0.66 0.405707
Target:  5'- gGUCCGGgGGCCugguggcaccuCCCCggcgGCCGCAuauacuGCUg -3'
miRNA:   3'- -CAGGCCgCCGGu----------GGGG----CGGCGU------CGAg -5'
5510 3' -66.6 NC_001798.1 + 124117 0.67 0.359097
Target:  5'- uUCCGccaacgcgcuGUGGCgCGcCCCCGCCGUGGCg- -3'
miRNA:   3'- cAGGC----------CGCCG-GU-GGGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 126468 0.67 0.381928
Target:  5'- gGUCCGaGaCGGCCAugaccucgcCCCCGUCGCccccCUCg -3'
miRNA:   3'- -CAGGC-C-GCCGGU---------GGGGCGGCGuc--GAG- -5'
5510 3' -66.6 NC_001798.1 + 126740 0.69 0.265517
Target:  5'- cUUCGcGCGGCCGCaCCCacgacauCCGCGGCUUu -3'
miRNA:   3'- cAGGC-CGCCGGUG-GGGc------GGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 129532 0.68 0.309623
Target:  5'- cUCCGGgGcGCgGCCCUGCUGCuGC-Cg -3'
miRNA:   3'- cAGGCCgC-CGgUGGGGCGGCGuCGaG- -5'
5510 3' -66.6 NC_001798.1 + 130140 0.69 0.290067
Target:  5'- -gUCGGgGGCCACUUCGUCGUAGaUCg -3'
miRNA:   3'- caGGCCgCCGGUGGGGCGGCGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 132124 0.66 0.438819
Target:  5'- gGUCCugcaGGCGGCCcuGCgCCGCCGggggcCGGCg- -3'
miRNA:   3'- -CAGG----CCGCCGG--UGgGGCGGC-----GUCGag -5'
5510 3' -66.6 NC_001798.1 + 134167 0.72 0.17956
Target:  5'- -gCCGucGCGGCCGCCCgCGCCGCgacGGCc- -3'
miRNA:   3'- caGGC--CGCCGGUGGG-GCGGCG---UCGag -5'
5510 3' -66.6 NC_001798.1 + 134196 0.69 0.277575
Target:  5'- -cCCGGCcGCCuCCCCGCUGgAGCc- -3'
miRNA:   3'- caGGCCGcCGGuGGGGCGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 134915 0.7 0.237229
Target:  5'- -gCCGGCcGCCGCCgCCGCCGaguCGGCg- -3'
miRNA:   3'- caGGCCGcCGGUGG-GGCGGC---GUCGag -5'
5510 3' -66.6 NC_001798.1 + 134961 0.69 0.283767
Target:  5'- -gCC-GCGGCCACCCaUGCCGCGuGCc- -3'
miRNA:   3'- caGGcCGCCGGUGGG-GCGGCGU-CGag -5'
5510 3' -66.6 NC_001798.1 + 135285 0.68 0.32321
Target:  5'- --gUGGCGGCCGCCCCcUCGgAGCc- -3'
miRNA:   3'- cagGCCGCCGGUGGGGcGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 135767 0.7 0.242127
Target:  5'- cUCCGGCGGCCggccgccGgCCCGCCGgAGg-- -3'
miRNA:   3'- cAGGCCGCCGG-------UgGGGCGGCgUCgag -5'
5510 3' -66.6 NC_001798.1 + 137425 0.68 0.309623
Target:  5'- gGUCCGGgacCGGgacCCGCCCCGCggggaCGC-GCUCg -3'
miRNA:   3'- -CAGGCC---GCC---GGUGGGGCG-----GCGuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.