miRNA display CGI


Results 121 - 140 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 47951 0.74 0.131439
Target:  5'- -cCCGGCGaCCgACCCCGcCCGCGGCa- -3'
miRNA:   3'- caGGCCGCcGG-UGGGGC-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 47814 0.68 0.329468
Target:  5'- cGUCgCGGgcucucaCGGCCccgGCCCCGCgCGC-GCUCc -3'
miRNA:   3'- -CAG-GCC-------GCCGG---UGGGGCG-GCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 47650 0.68 0.330168
Target:  5'- aGUCCGcGCGaCgACuUCCGCCGCGGCg- -3'
miRNA:   3'- -CAGGC-CGCcGgUG-GGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 47243 0.66 0.447336
Target:  5'- cGUUgGGCGGCC-CCCgGCCuuuGCUUc -3'
miRNA:   3'- -CAGgCCGCCGGuGGGgCGGcguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 44162 0.67 0.374211
Target:  5'- -cCCGGCGGUaCGCCCCcaGCaCGCGcGcCUCg -3'
miRNA:   3'- caGGCCGCCG-GUGGGG--CG-GCGU-C-GAG- -5'
5510 3' -66.6 NC_001798.1 + 43879 0.67 0.381928
Target:  5'- -cCCaGCGGCCgcgGCCCCGCgggaGUacuGGCUCu -3'
miRNA:   3'- caGGcCGCCGG---UGGGGCGg---CG---UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 43526 0.7 0.226639
Target:  5'- --gCGGCGGCCGCgucuCCCGCCaggGCGGUUUc -3'
miRNA:   3'- cagGCCGCCGGUG----GGGCGG---CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 40846 0.74 0.119208
Target:  5'- uUuuGGgGGCCgaGCCCCGCCGCAGgaUg -3'
miRNA:   3'- cAggCCgCCGG--UGGGGCGGCGUCgaG- -5'
5510 3' -66.6 NC_001798.1 + 40016 0.67 0.351701
Target:  5'- cGUCgCGGCGGCCcuCCUCGUC-CcGCUCc -3'
miRNA:   3'- -CAG-GCCGCCGGu-GGGGCGGcGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 39681 0.77 0.080168
Target:  5'- -cCCGGCGGCgACCUCGCCGCccGcCUCg -3'
miRNA:   3'- caGGCCGCCGgUGGGGCGGCGu-C-GAG- -5'
5510 3' -66.6 NC_001798.1 + 37412 0.7 0.237229
Target:  5'- gGUCCGuGgGGCCggccgaccaACCCCGCgUGCAaaGCUCg -3'
miRNA:   3'- -CAGGC-CgCCGG---------UGGGGCG-GCGU--CGAG- -5'
5510 3' -66.6 NC_001798.1 + 35609 0.71 0.192693
Target:  5'- cUCCGGgGGCuccgCACUCUGCC-CGGCUCg -3'
miRNA:   3'- cAGGCCgCCG----GUGGGGCGGcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 35556 0.7 0.226639
Target:  5'- -gCCGGCccGGCCcgGCCCCGgagcCCGCGGCg- -3'
miRNA:   3'- caGGCCG--CCGG--UGGGGC----GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 35015 0.67 0.374211
Target:  5'- -cUCGGCGGCCaaGCCCCGgcCCGCccggGGgUCc -3'
miRNA:   3'- caGGCCGCCGG--UGGGGC--GGCG----UCgAG- -5'
5510 3' -66.6 NC_001798.1 + 34796 0.66 0.438819
Target:  5'- -gCCGGCgcGGCCcgggGCCCCGgggcccCCGC-GCUCc -3'
miRNA:   3'- caGGCCG--CCGG----UGGGGC------GGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 33634 0.7 0.231883
Target:  5'- -cCCGGCGcCCACCCCGcCCGCAcaccuGCcCg -3'
miRNA:   3'- caGGCCGCcGGUGGGGC-GGCGU-----CGaG- -5'
5510 3' -66.6 NC_001798.1 + 31878 0.66 0.404899
Target:  5'- --gCGGCGGcCCGCCCCcggaagaGgCGCGGgUCg -3'
miRNA:   3'- cagGCCGCC-GGUGGGG-------CgGCGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 31848 0.67 0.389751
Target:  5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3'
miRNA:   3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 31276 0.74 0.128277
Target:  5'- gGUCUGGgGGCgGCCCUGCCGUcGCg- -3'
miRNA:   3'- -CAGGCCgCCGgUGGGGCGGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 31240 0.67 0.3666
Target:  5'- --gCGGCGG-CGCCCCGuuGCgGGCg- -3'
miRNA:   3'- cagGCCGCCgGUGGGGCggCG-UCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.