Results 81 - 100 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 75273 | 0.67 | 0.392118 |
Target: 5'- gGUCCGGCucgcggcgcgcgauGCCGCCCUggcccgcgaggugGCCGCguguucgcAGCUCa -3' miRNA: 3'- -CAGGCCGc-------------CGGUGGGG-------------CGGCG--------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 104665 | 0.67 | 0.389751 |
Target: 5'- -cCCGugcucguaGCGGCCGCCggCCGCCGCGaacugcGCUUu -3' miRNA: 3'- caGGC--------CGCCGGUGG--GGCGGCGU------CGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31848 | 0.67 | 0.389751 |
Target: 5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3' miRNA: 3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 53449 | 0.67 | 0.389751 |
Target: 5'- uGUCgGGCGGCCAgCUgaGCCGC-GC-Ca -3' miRNA: 3'- -CAGgCCGCCGGUgGGg-CGGCGuCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2566 | 0.67 | 0.388964 |
Target: 5'- ---gGGCGGCCGCggggcggggggcgUCCG-CGCGGCUCu -3' miRNA: 3'- caggCCGCCGGUG-------------GGGCgGCGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 43879 | 0.67 | 0.381928 |
Target: 5'- -cCCaGCGGCCgcgGCCCCGCgggaGUacuGGCUCu -3' miRNA: 3'- caGGcCGCCGG---UGGGGCGg---CG---UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 27984 | 0.67 | 0.381928 |
Target: 5'- -cCCGGCGcuccagccguGCCgcGCCCCGgCGC-GCUCc -3' miRNA: 3'- caGGCCGC----------CGG--UGGGGCgGCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 71849 | 0.66 | 0.403287 |
Target: 5'- cGUCgGGCGccuaGCCACgCCCccucgguucaccugGCCGCGGC-Ca -3' miRNA: 3'- -CAGgCCGC----CGGUG-GGG--------------CGGCGUCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31878 | 0.66 | 0.404899 |
Target: 5'- --gCGGCGGcCCGCCCCcggaagaGgCGCGGgUCg -3' miRNA: 3'- cagGCCGCC-GGUGGGG-------CgGCGUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 153253 | 0.66 | 0.405707 |
Target: 5'- -aCCcGCGcGCCGCCgCCGCCGCcucCUCc -3' miRNA: 3'- caGGcCGC-CGGUGG-GGCGGCGuc-GAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 86834 | 0.66 | 0.413837 |
Target: 5'- cUCCGGCucccGGCCcggGCCCgGCCGCgacaagacccGGCg- -3' miRNA: 3'- cAGGCCG----CCGG---UGGGgCGGCG----------UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 61877 | 0.66 | 0.413837 |
Target: 5'- -cCCGGCGGCCcccucgggcgcGCCCUcgaaGCCgGCccugcgccuGGCUCa -3' miRNA: 3'- caGGCCGCCGG-----------UGGGG----CGG-CG---------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 25967 | 0.66 | 0.413837 |
Target: 5'- -gCCGGCGGCgCgggACCUgCGCCGCAccguGCUg -3' miRNA: 3'- caGGCCGCCG-G---UGGG-GCGGCGU----CGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 3293 | 0.66 | 0.413837 |
Target: 5'- -gCCGGCGa-CGCCgCCGCCGaCGGCa- -3' miRNA: 3'- caGGCCGCcgGUGG-GGCGGC-GUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 3509 | 0.66 | 0.411387 |
Target: 5'- --aCGGCGGCCgccacgugcgccagGCCCCaGCCGaAGCg- -3' miRNA: 3'- cagGCCGCCGG--------------UGGGG-CGGCgUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 152198 | 0.66 | 0.405707 |
Target: 5'- -cCCGGgGGUCGCCCUcucaccguGCCGgGGgUCu -3' miRNA: 3'- caGGCCgCCGGUGGGG--------CGGCgUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 75217 | 0.66 | 0.405707 |
Target: 5'- -cCCGGC-GCCGaCCUGgCGCAGCUg -3' miRNA: 3'- caGGCCGcCGGUgGGGCgGCGUCGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 146497 | 0.66 | 0.405707 |
Target: 5'- -gCCGGgcCGGCaaCGCCCCgcgccgGCCGCGGCg- -3' miRNA: 3'- caGGCC--GCCG--GUGGGG------CGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 123941 | 0.66 | 0.405707 |
Target: 5'- gGUCCGGgGGCCugguggcaccuCCCCggcgGCCGCAuauacuGCUg -3' miRNA: 3'- -CAGGCCgCCGGu----------GGGG----CGGCGU------CGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 24940 | 0.66 | 0.405707 |
Target: 5'- cUCC-GCcGCCGCgCCGCCGCGgaccuGCUCu -3' miRNA: 3'- cAGGcCGcCGGUGgGGCGGCGU-----CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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