miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 31240 0.67 0.3666
Target:  5'- --gCGGCGG-CGCCCCGuuGCgGGCg- -3'
miRNA:   3'- cagGCCGCCgGUGGGGCggCG-UCGag -5'
5510 3' -66.6 NC_001798.1 + 31205 0.67 0.3666
Target:  5'- -aCCGGCGcccccuGgCGCCCCGCggaGCAGCa- -3'
miRNA:   3'- caGGCCGC------CgGUGGGGCGg--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 92497 0.67 0.3666
Target:  5'- uUCaCGGCGGCCGCCaCCugGCCccCAGCa- -3'
miRNA:   3'- cAG-GCCGCCGGUGG-GG--CGGc-GUCGag -5'
5510 3' -66.6 NC_001798.1 + 27105 0.67 0.3666
Target:  5'- gGUCaGGUGGCCcgaGCCCCcCCGCAGg-- -3'
miRNA:   3'- -CAGgCCGCCGG---UGGGGcGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 124117 0.67 0.359097
Target:  5'- uUCCGccaacgcgcuGUGGCgCGcCCCCGCCGUGGCg- -3'
miRNA:   3'- cAGGC----------CGCCG-GU-GGGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 53449 0.67 0.389751
Target:  5'- uGUCgGGCGGCCAgCUgaGCCGC-GC-Ca -3'
miRNA:   3'- -CAGgCCGCCGGUgGGg-CGGCGuCGaG- -5'
5510 3' -66.6 NC_001798.1 + 31848 0.67 0.389751
Target:  5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3'
miRNA:   3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 152198 0.66 0.405707
Target:  5'- -cCCGGgGGUCGCCCUcucaccguGCCGgGGgUCu -3'
miRNA:   3'- caGGCCgCCGGUGGGG--------CGGCgUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 75217 0.66 0.405707
Target:  5'- -cCCGGC-GCCGaCCUGgCGCAGCUg -3'
miRNA:   3'- caGGCCGcCGGUgGGGCgGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 146497 0.66 0.405707
Target:  5'- -gCCGGgcCGGCaaCGCCCCgcgccgGCCGCGGCg- -3'
miRNA:   3'- caGGCC--GCCG--GUGGGG------CGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 123941 0.66 0.405707
Target:  5'- gGUCCGGgGGCCugguggcaccuCCCCggcgGCCGCAuauacuGCUg -3'
miRNA:   3'- -CAGGCCgCCGGu----------GGGG----CGGCGU------CGAg -5'
5510 3' -66.6 NC_001798.1 + 24940 0.66 0.405707
Target:  5'- cUCC-GCcGCCGCgCCGCCGCGgaccuGCUCu -3'
miRNA:   3'- cAGGcCGcCGGUGgGGCGGCGU-----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 153253 0.66 0.405707
Target:  5'- -aCCcGCGcGCCGCCgCCGCCGCcucCUCc -3'
miRNA:   3'- caGGcCGC-CGGUGG-GGCGGCGuc-GAG- -5'
5510 3' -66.6 NC_001798.1 + 31878 0.66 0.404899
Target:  5'- --gCGGCGGcCCGCCCCcggaagaGgCGCGGgUCg -3'
miRNA:   3'- cagGCCGCC-GGUGGGG-------CgGCGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 71849 0.66 0.403287
Target:  5'- cGUCgGGCGccuaGCCACgCCCccucgguucaccugGCCGCGGC-Ca -3'
miRNA:   3'- -CAGgCCGC----CGGUG-GGG--------------CGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 91855 0.66 0.397677
Target:  5'- -gCCGuacauauacCGGCCGCCCCgGCCGagcauaccCAGCUCu -3'
miRNA:   3'- caGGCc--------GCCGGUGGGG-CGGC--------GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 29794 0.66 0.397677
Target:  5'- cUCCcgGGCGGaCCccgGCCCCgagcggccGCCGCGGCa- -3'
miRNA:   3'- cAGG--CCGCC-GG---UGGGG--------CGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 2182 0.66 0.395288
Target:  5'- gGUCgGGCaccuggcgcauccaGGCCGCCgCGCggCGCAGCg- -3'
miRNA:   3'- -CAGgCCG--------------CCGGUGGgGCG--GCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 75273 0.67 0.392118
Target:  5'- gGUCCGGCucgcggcgcgcgauGCCGCCCUggcccgcgaggugGCCGCguguucgcAGCUCa -3'
miRNA:   3'- -CAGGCCGc-------------CGGUGGGG-------------CGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 104665 0.67 0.389751
Target:  5'- -cCCGugcucguaGCGGCCGCCggCCGCCGCGaacugcGCUUu -3'
miRNA:   3'- caGGC--------CGCCGGUGG--GGCGGCGU------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.