Results 141 - 160 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 4750 | 0.67 | 0.359097 |
Target: 5'- -gCCGG-GGCCGCCUCGUCGgcauCGGCaUCg -3' miRNA: 3'- caGGCCgCCGGUGGGGCGGC----GUCG-AG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 122368 | 0.67 | 0.359097 |
Target: 5'- ---gGGCGGgcgacgcgcCCGCCCC-CCGCGGCUg -3' miRNA: 3'- caggCCGCC---------GGUGGGGcGGCGUCGAg -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 27984 | 0.67 | 0.381928 |
Target: 5'- -cCCGGCGcuccagccguGCCgcGCCCCGgCGC-GCUCc -3' miRNA: 3'- caGGCCGC----------CGG--UGGGGCgGCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 43879 | 0.67 | 0.381928 |
Target: 5'- -cCCaGCGGCCgcgGCCCCGCgggaGUacuGGCUCu -3' miRNA: 3'- caGGcCGCCGG---UGGGGCGg---CG---UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2566 | 0.67 | 0.388964 |
Target: 5'- ---gGGCGGCCGCggggcggggggcgUCCG-CGCGGCUCu -3' miRNA: 3'- caggCCGCCGGUG-------------GGGCgGCGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 53449 | 0.67 | 0.389751 |
Target: 5'- uGUCgGGCGGCCAgCUgaGCCGC-GC-Ca -3' miRNA: 3'- -CAGgCCGCCGGUgGGg-CGGCGuCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31848 | 0.67 | 0.389751 |
Target: 5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3' miRNA: 3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 104665 | 0.67 | 0.389751 |
Target: 5'- -cCCGugcucguaGCGGCCGCCggCCGCCGCGaacugcGCUUu -3' miRNA: 3'- caGGC--------CGCCGGUGG--GGCGGCGU------CGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 75273 | 0.67 | 0.392118 |
Target: 5'- gGUCCGGCucgcggcgcgcgauGCCGCCCUggcccgcgaggugGCCGCguguucgcAGCUCa -3' miRNA: 3'- -CAGGCCGc-------------CGGUGGGG-------------CGGCG--------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2182 | 0.66 | 0.395288 |
Target: 5'- gGUCgGGCaccuggcgcauccaGGCCGCCgCGCggCGCAGCg- -3' miRNA: 3'- -CAGgCCG--------------CCGGUGGgGCG--GCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 126468 | 0.67 | 0.381928 |
Target: 5'- gGUCCGaGaCGGCCAugaccucgcCCCCGUCGCccccCUCg -3' miRNA: 3'- -CAGGC-C-GCCGGU---------GGGGCGGCGuc--GAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 44162 | 0.67 | 0.374211 |
Target: 5'- -cCCGGCGGUaCGCCCCcaGCaCGCGcGcCUCg -3' miRNA: 3'- caGGCCGCCG-GUGGGG--CG-GCGU-C-GAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 124117 | 0.67 | 0.359097 |
Target: 5'- uUCCGccaacgcgcuGUGGCgCGcCCCCGCCGUGGCg- -3' miRNA: 3'- cAGGC----------CGCCG-GU-GGGGCGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 27105 | 0.67 | 0.3666 |
Target: 5'- gGUCaGGUGGCCcgaGCCCCcCCGCAGg-- -3' miRNA: 3'- -CAGgCCGCCGG---UGGGGcGGCGUCgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 92497 | 0.67 | 0.3666 |
Target: 5'- uUCaCGGCGGCCGCCaCCugGCCccCAGCa- -3' miRNA: 3'- cAG-GCCGCCGGUGG-GG--CGGc-GUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31205 | 0.67 | 0.3666 |
Target: 5'- -aCCGGCGcccccuGgCGCCCCGCggaGCAGCa- -3' miRNA: 3'- caGGCCGC------CgGUGGGGCGg--CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 31240 | 0.67 | 0.3666 |
Target: 5'- --gCGGCGG-CGCCCCGuuGCgGGCg- -3' miRNA: 3'- cagGCCGCCgGUGGGGCggCG-UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 109360 | 0.67 | 0.3666 |
Target: 5'- -gCCGGCcuGGCCGCCCgGggaGCAGCg- -3' miRNA: 3'- caGGCCG--CCGGUGGGgCgg-CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 104172 | 0.67 | 0.373445 |
Target: 5'- cGUCCaggcacagGGCGGCCAgCCCCGgaaacaaCUGgguCAGCUCg -3' miRNA: 3'- -CAGG--------CCGCCGGU-GGGGC-------GGC---GUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 35015 | 0.67 | 0.374211 |
Target: 5'- -cUCGGCGGCCaaGCCCCGgcCCGCccggGGgUCc -3' miRNA: 3'- caGGCCGCCGG--UGGGGC--GGCG----UCgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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