miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 24722 0.78 0.060766
Target:  5'- -cCCGcgggcGCGGCCGCCCCGCCGCAcGC-Cg -3'
miRNA:   3'- caGGC-----CGCCGGUGGGGCGGCGU-CGaG- -5'
5510 3' -66.6 NC_001798.1 + 147077 0.78 0.062166
Target:  5'- -cUCGGCGGCCGCCCCcuccggcGCCGCGcGUUCg -3'
miRNA:   3'- caGGCCGCCGGUGGGG-------CGGCGU-CGAG- -5'
5510 3' -66.6 NC_001798.1 + 82005 0.77 0.080168
Target:  5'- -cCCGGgGGCgACCgCCGCCGCGGC-Cg -3'
miRNA:   3'- caGGCCgCCGgUGG-GGCGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 39681 0.77 0.080168
Target:  5'- -cCCGGCGGCgACCUCGCCGCccGcCUCg -3'
miRNA:   3'- caGGCCGCCGgUGGGGCGGCGu-C-GAG- -5'
5510 3' -66.6 NC_001798.1 + 54664 0.76 0.088597
Target:  5'- -gCCGGCaGCCGCggcgcgCCCGCuCGCGGCUCa -3'
miRNA:   3'- caGGCCGcCGGUG------GGGCG-GCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 23344 0.76 0.090833
Target:  5'- -gCCGGCGcGCC-CCCCGCCgGC-GCUCg -3'
miRNA:   3'- caGGCCGC-CGGuGGGGCGG-CGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 28959 0.76 0.093122
Target:  5'- -cCCGGC-GCCGCCCCGCCGCuccGCcCg -3'
miRNA:   3'- caGGCCGcCGGUGGGGCGGCGu--CGaG- -5'
5510 3' -66.6 NC_001798.1 + 4904 0.75 0.100321
Target:  5'- aUCCGG-GGCCGCCggucgucuCCGCCGCGGCcCg -3'
miRNA:   3'- cAGGCCgCCGGUGG--------GGCGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 102891 0.75 0.108043
Target:  5'- uGUCCGGCgaucccGGCCugC-CGCCGCcGCUCg -3'
miRNA:   3'- -CAGGCCG------CCGGugGgGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 56244 0.75 0.113218
Target:  5'- -aCCGGCGGCCgggcccgGCCCCGgaguuaCCGCAGC-Cg -3'
miRNA:   3'- caGGCCGCCGG-------UGGGGC------GGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 457 0.75 0.11632
Target:  5'- gGUCCcGCGGCCGCCuCCcCCGCGGC-Cg -3'
miRNA:   3'- -CAGGcCGCCGGUGG-GGcGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 102359 0.74 0.119208
Target:  5'- cUCCGGCGGCCGCcggaagcccaCCCGCCuggcggucgGCGGCg- -3'
miRNA:   3'- cAGGCCGCCGGUG----------GGGCGG---------CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 40846 0.74 0.119208
Target:  5'- uUuuGGgGGCCgaGCCCCGCCGCAGgaUg -3'
miRNA:   3'- cAggCCgCCGG--UGGGGCGGCGUCgaG- -5'
5510 3' -66.6 NC_001798.1 + 71205 0.74 0.122162
Target:  5'- cGUCCGGCcGUCACcggCCUGCUGCAGCUa -3'
miRNA:   3'- -CAGGCCGcCGGUG---GGGCGGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 98609 0.74 0.128277
Target:  5'- -cCCGGCGGCCcCCCgCGCCucggGCGGCg- -3'
miRNA:   3'- caGGCCGCCGGuGGG-GCGG----CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 31276 0.74 0.128277
Target:  5'- gGUCUGGgGGCgGCCCUGCCGUcGCg- -3'
miRNA:   3'- -CAGGCCgCCGgUGGGGCGGCGuCGag -5'
5510 3' -66.6 NC_001798.1 + 47951 0.74 0.131439
Target:  5'- -cCCGGCGaCCgACCCCGcCCGCGGCa- -3'
miRNA:   3'- caGGCCGCcGG-UGGGGC-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 5386 0.74 0.134673
Target:  5'- cGUCCguGGCGGCgGCCcguuggucgcgCCGCCGCcGCUCc -3'
miRNA:   3'- -CAGG--CCGCCGgUGG-----------GGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 153691 0.73 0.141362
Target:  5'- --gCGGgGGCCGCCgCCGgCGCAGgCUCa -3'
miRNA:   3'- cagGCCgCCGGUGG-GGCgGCGUC-GAG- -5'
5510 3' -66.6 NC_001798.1 + 96169 0.73 0.151966
Target:  5'- --aUGGCGGCCgcGCCCCcgGCCGCGGUUUc -3'
miRNA:   3'- cagGCCGCCGG--UGGGG--CGGCGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.