miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 131 0.66 0.438819
Target:  5'- -cCCGGagcCGGCCGCUCCcCCGCgGGCg- -3'
miRNA:   3'- caGGCC---GCCGGUGGGGcGGCG-UCGag -5'
5510 3' -66.6 NC_001798.1 + 191 0.68 0.316362
Target:  5'- uUCCcGCGGgCGCCCC-CgCGCGGCUUu -3'
miRNA:   3'- cAGGcCGCCgGUGGGGcG-GCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 457 0.75 0.11632
Target:  5'- gGUCCcGCGGCCGCCuCCcCCGCGGC-Cg -3'
miRNA:   3'- -CAGGcCGCCGGUGG-GGcGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 502 0.66 0.433753
Target:  5'- -cCCGGgGGCUucCCCCGCCccuccccccgcgcccGCGGCc- -3'
miRNA:   3'- caGGCCgCCGGu-GGGGCGG---------------CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 1144 0.69 0.259648
Target:  5'- -cUCGGCGGCguggccaGCCCCGCgGCGGUc- -3'
miRNA:   3'- caGGCCGCCGg------UGGGGCGgCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 1472 0.7 0.250479
Target:  5'- aGUCCGGCGcGCCgggcgccauggcgucGCCCgCGCCcgagGCGGCg- -3'
miRNA:   3'- -CAGGCCGC-CGG---------------UGGG-GCGG----CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 2038 0.69 0.267298
Target:  5'- -gCCGGUugcccagGGCCGCcagcaggcaggacagCCCGCCGC-GCUCg -3'
miRNA:   3'- caGGCCG-------CCGGUG---------------GGGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 2093 0.67 0.351701
Target:  5'- cUCCGGgGGgggcCCGcCCCCGgCGCGGCcCg -3'
miRNA:   3'- cAGGCCgCC----GGU-GGGGCgGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 2182 0.66 0.395288
Target:  5'- gGUCgGGCaccuggcgcauccaGGCCGCCgCGCggCGCAGCg- -3'
miRNA:   3'- -CAGgCCG--------------CCGGUGGgGCG--GCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 2439 0.67 0.351701
Target:  5'- -cCCGGCGGCUggcggcGCCagCCGCCcuGCGGgUCg -3'
miRNA:   3'- caGGCCGCCGG------UGG--GGCGG--CGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 2566 0.67 0.388964
Target:  5'- ---gGGCGGCCGCggggcggggggcgUCCG-CGCGGCUCu -3'
miRNA:   3'- caggCCGCCGGUG-------------GGGCgGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 2625 0.7 0.248229
Target:  5'- -cCCGGCGG-CGCCCUGgCCGgGGCg- -3'
miRNA:   3'- caGGCCGCCgGUGGGGC-GGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 2853 0.67 0.359097
Target:  5'- --aCGGCGGCCacggcgGCCUCGCUGCcGC-Cg -3'
miRNA:   3'- cagGCCGCCGG------UGGGGCGGCGuCGaG- -5'
5510 3' -66.6 NC_001798.1 + 3293 0.66 0.413837
Target:  5'- -gCCGGCGa-CGCCgCCGCCGaCGGCa- -3'
miRNA:   3'- caGGCCGCcgGUGG-GGCGGC-GUCGag -5'
5510 3' -66.6 NC_001798.1 + 3509 0.66 0.411387
Target:  5'- --aCGGCGGCCgccacgugcgccagGCCCCaGCCGaAGCg- -3'
miRNA:   3'- cagGCCGCCGG--------------UGGGG-CGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 3897 0.66 0.438819
Target:  5'- -gCgGGgGGCCgGCCCCggGCCaCGGCUCc -3'
miRNA:   3'- caGgCCgCCGG-UGGGG--CGGcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 3964 0.66 0.430395
Target:  5'- -gCCGGaGGCCGCgUCGgCGUccAGCUCg -3'
miRNA:   3'- caGGCCgCCGGUGgGGCgGCG--UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 3995 0.72 0.17956
Target:  5'- -gCCGG-GGCCGCCCgGCCGUgaAGCg- -3'
miRNA:   3'- caGGCCgCCGGUGGGgCGGCG--UCGag -5'
5510 3' -66.6 NC_001798.1 + 4028 0.68 0.32321
Target:  5'- cGUCgCGGcCGGCCACCgCCGCgcgggcccgGCGGCg- -3'
miRNA:   3'- -CAG-GCC-GCCGGUGG-GGCGg--------CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 4750 0.67 0.359097
Target:  5'- -gCCGG-GGCCGCCUCGUCGgcauCGGCaUCg -3'
miRNA:   3'- caGGCCgCCGGUGGGGCGGC----GUCG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.