miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 60163 0.66 0.422067
Target:  5'- -gUUGGCGGCCGCuuggCCCGCCuucuuCAGCg- -3'
miRNA:   3'- caGGCCGCCGGUG----GGGCGGc----GUCGag -5'
5510 3' -66.6 NC_001798.1 + 66859 0.66 0.422067
Target:  5'- uUCCGGgGaGUCGCCggggCGCCGgGGCUUg -3'
miRNA:   3'- cAGGCCgC-CGGUGGg---GCGGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 85354 0.66 0.422067
Target:  5'- --aCGG-GGCC-CUUCGCCGCGGCg- -3'
miRNA:   3'- cagGCCgCCGGuGGGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 104452 0.66 0.422067
Target:  5'- -gUUGGCGGUCG-CCCGCaGCAGCg- -3'
miRNA:   3'- caGGCCGCCGGUgGGGCGgCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 109431 0.66 0.422067
Target:  5'- -cCCGGCGGCC-CgCCUGCgGCuggaGGCg- -3'
miRNA:   3'- caGGCCGCCGGuG-GGGCGgCG----UCGag -5'
5510 3' -66.6 NC_001798.1 + 91110 0.66 0.422067
Target:  5'- -cCCGGUGcGCUGCUCCGCgGgGGCg- -3'
miRNA:   3'- caGGCCGC-CGGUGGGGCGgCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 3293 0.66 0.413837
Target:  5'- -gCCGGCGa-CGCCgCCGCCGaCGGCa- -3'
miRNA:   3'- caGGCCGCcgGUGG-GGCGGC-GUCGag -5'
5510 3' -66.6 NC_001798.1 + 25967 0.66 0.413837
Target:  5'- -gCCGGCGGCgCgggACCUgCGCCGCAccguGCUg -3'
miRNA:   3'- caGGCCGCCG-G---UGGG-GCGGCGU----CGAg -5'
5510 3' -66.6 NC_001798.1 + 61877 0.66 0.413837
Target:  5'- -cCCGGCGGCCcccucgggcgcGCCCUcgaaGCCgGCccugcgccuGGCUCa -3'
miRNA:   3'- caGGCCGCCGG-----------UGGGG----CGG-CG---------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 86834 0.66 0.413837
Target:  5'- cUCCGGCucccGGCCcggGCCCgGCCGCgacaagacccGGCg- -3'
miRNA:   3'- cAGGCCG----CCGG---UGGGgCGGCG----------UCGag -5'
5510 3' -66.6 NC_001798.1 + 3509 0.66 0.411387
Target:  5'- --aCGGCGGCCgccacgugcgccagGCCCCaGCCGaAGCg- -3'
miRNA:   3'- cagGCCGCCGG--------------UGGGG-CGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 153253 0.66 0.405707
Target:  5'- -aCCcGCGcGCCGCCgCCGCCGCcucCUCc -3'
miRNA:   3'- caGGcCGC-CGGUGG-GGCGGCGuc-GAG- -5'
5510 3' -66.6 NC_001798.1 + 24940 0.66 0.405707
Target:  5'- cUCC-GCcGCCGCgCCGCCGCGgaccuGCUCu -3'
miRNA:   3'- cAGGcCGcCGGUGgGGCGGCGU-----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 123941 0.66 0.405707
Target:  5'- gGUCCGGgGGCCugguggcaccuCCCCggcgGCCGCAuauacuGCUg -3'
miRNA:   3'- -CAGGCCgCCGGu----------GGGG----CGGCGU------CGAg -5'
5510 3' -66.6 NC_001798.1 + 146497 0.66 0.405707
Target:  5'- -gCCGGgcCGGCaaCGCCCCgcgccgGCCGCGGCg- -3'
miRNA:   3'- caGGCC--GCCG--GUGGGG------CGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 75217 0.66 0.405707
Target:  5'- -cCCGGC-GCCGaCCUGgCGCAGCUg -3'
miRNA:   3'- caGGCCGcCGGUgGGGCgGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 152198 0.66 0.405707
Target:  5'- -cCCGGgGGUCGCCCUcucaccguGCCGgGGgUCu -3'
miRNA:   3'- caGGCCgCCGGUGGGG--------CGGCgUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 31878 0.66 0.404899
Target:  5'- --gCGGCGGcCCGCCCCcggaagaGgCGCGGgUCg -3'
miRNA:   3'- cagGCCGCC-GGUGGGG-------CgGCGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 71849 0.66 0.403287
Target:  5'- cGUCgGGCGccuaGCCACgCCCccucgguucaccugGCCGCGGC-Ca -3'
miRNA:   3'- -CAGgCCGC----CGGUG-GGG--------------CGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 29794 0.66 0.397677
Target:  5'- cUCCcgGGCGGaCCccgGCCCCgagcggccGCCGCGGCa- -3'
miRNA:   3'- cAGG--CCGCC-GG---UGGGG--------CGGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.