miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 414 0.78 0.332688
Target:  5'- -cGAGcUCGCGGCAGCCCCuccccCCcgCGCg -3'
miRNA:   3'- caCUC-AGUGCCGUUGGGGu----GGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 31273 0.78 0.347975
Target:  5'- cUGGGUCugGggGCGGCCCUGCCgUCGCg -3'
miRNA:   3'- cACUCAGugC--CGUUGGGGUGGaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 52794 0.77 0.388342
Target:  5'- cGUGAGcgggACGGCAGaCCCCGCCUUCcuGCu -3'
miRNA:   3'- -CACUCag--UGCCGUU-GGGGUGGAAG--CG- -5'
5510 5' -55.5 NC_001798.1 + 152633 0.76 0.405328
Target:  5'- -gGAGUCccccCGGC-GCCCCGCCggCGCg -3'
miRNA:   3'- caCUCAGu---GCCGuUGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 48779 0.76 0.421892
Target:  5'- -cGGGgacgCACGGCAcCCCCGgcgauucCCUUCGCg -3'
miRNA:   3'- caCUCa---GUGCCGUuGGGGU-------GGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 47232 0.76 0.422774
Target:  5'- gGUGGGcgugucgUugGGCGGCCCCcgGCCUUUGCu -3'
miRNA:   3'- -CACUCa------GugCCGUUGGGG--UGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 24726 0.76 0.431665
Target:  5'- -cGGG-CGCGGCcGCCCCGCCgcaCGCc -3'
miRNA:   3'- caCUCaGUGCCGuUGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 4023 0.75 0.48718
Target:  5'- cGUGGcGUCGCGGcCGGCCaCCGCCg-CGCg -3'
miRNA:   3'- -CACU-CAGUGCC-GUUGG-GGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 70941 0.73 0.596374
Target:  5'- -cGGGgCGCGGUggUCCCGCCgcCGCu -3'
miRNA:   3'- caCUCaGUGCCGuuGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 106091 0.73 0.596374
Target:  5'- --cGGUCGCGGCGACCCggCGCCgcgacCGCc -3'
miRNA:   3'- cacUCAGUGCCGUUGGG--GUGGaa---GCG- -5'
5510 5' -55.5 NC_001798.1 + 102887 0.72 0.616818
Target:  5'- cGUGuGUC-CGGCGAUCCCgGCCUgcCGCc -3'
miRNA:   3'- -CACuCAGuGCCGUUGGGG-UGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 53831 0.72 0.637308
Target:  5'- cGUGuGUCGCcGCcugGGCCCCGCCgaUCGCc -3'
miRNA:   3'- -CACuCAGUGcCG---UUGGGGUGGa-AGCG- -5'
5510 5' -55.5 NC_001798.1 + 102391 0.72 0.647551
Target:  5'- --cGGUCgGCGGCGAuggcCCCCACCagCGCg -3'
miRNA:   3'- cacUCAG-UGCCGUU----GGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 121197 0.72 0.647551
Target:  5'- -cGGGaCcCGaGCAGCCCCGCCU-CGCu -3'
miRNA:   3'- caCUCaGuGC-CGUUGGGGUGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 153685 0.72 0.657781
Target:  5'- -gGGGaCGCGGgGGCCgCCGCCggCGCa -3'
miRNA:   3'- caCUCaGUGCCgUUGG-GGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 19970 0.71 0.678172
Target:  5'- -cGAGcCGCGaUAGCCCCGCCggaCGCg -3'
miRNA:   3'- caCUCaGUGCcGUUGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 113653 0.71 0.698412
Target:  5'- uGUGGGUgGCGGCGGCggaCugCUUUGCc -3'
miRNA:   3'- -CACUCAgUGCCGUUGgg-GugGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 3912 0.71 0.708452
Target:  5'- -cGGGcCACGGCu-CCCCGCUgacguacccgUCGCg -3'
miRNA:   3'- caCUCaGUGCCGuuGGGGUGGa---------AGCG- -5'
5510 5' -55.5 NC_001798.1 + 92497 0.7 0.728329
Target:  5'- ----uUCACGGCGGCCgCCACCUg-GCc -3'
miRNA:   3'- cacucAGUGCCGUUGG-GGUGGAagCG- -5'
5510 5' -55.5 NC_001798.1 + 15379 0.7 0.738148
Target:  5'- cGUGGG-CGCGGCGgagGCgCCCACCggacccggggUUGCg -3'
miRNA:   3'- -CACUCaGUGCCGU---UG-GGGUGGa---------AGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.