Results 1 - 20 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 414 | 0.78 | 0.332688 |
Target: 5'- -cGAGcUCGCGGCAGCCCCuccccCCcgCGCg -3' miRNA: 3'- caCUC-AGUGCCGUUGGGGu----GGaaGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 31273 | 0.78 | 0.347975 |
Target: 5'- cUGGGUCugGggGCGGCCCUGCCgUCGCg -3' miRNA: 3'- cACUCAGugC--CGUUGGGGUGGaAGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 52794 | 0.77 | 0.388342 |
Target: 5'- cGUGAGcgggACGGCAGaCCCCGCCUUCcuGCu -3' miRNA: 3'- -CACUCag--UGCCGUU-GGGGUGGAAG--CG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 152633 | 0.76 | 0.405328 |
Target: 5'- -gGAGUCccccCGGC-GCCCCGCCggCGCg -3' miRNA: 3'- caCUCAGu---GCCGuUGGGGUGGaaGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 48779 | 0.76 | 0.421892 |
Target: 5'- -cGGGgacgCACGGCAcCCCCGgcgauucCCUUCGCg -3' miRNA: 3'- caCUCa---GUGCCGUuGGGGU-------GGAAGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 47232 | 0.76 | 0.422774 |
Target: 5'- gGUGGGcgugucgUugGGCGGCCCCcgGCCUUUGCu -3' miRNA: 3'- -CACUCa------GugCCGUUGGGG--UGGAAGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 24726 | 0.76 | 0.431665 |
Target: 5'- -cGGG-CGCGGCcGCCCCGCCgcaCGCc -3' miRNA: 3'- caCUCaGUGCCGuUGGGGUGGaa-GCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 4023 | 0.75 | 0.48718 |
Target: 5'- cGUGGcGUCGCGGcCGGCCaCCGCCg-CGCg -3' miRNA: 3'- -CACU-CAGUGCC-GUUGG-GGUGGaaGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 70941 | 0.73 | 0.596374 |
Target: 5'- -cGGGgCGCGGUggUCCCGCCgcCGCu -3' miRNA: 3'- caCUCaGUGCCGuuGGGGUGGaaGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 106091 | 0.73 | 0.596374 |
Target: 5'- --cGGUCGCGGCGACCCggCGCCgcgacCGCc -3' miRNA: 3'- cacUCAGUGCCGUUGGG--GUGGaa---GCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 102887 | 0.72 | 0.616818 |
Target: 5'- cGUGuGUC-CGGCGAUCCCgGCCUgcCGCc -3' miRNA: 3'- -CACuCAGuGCCGUUGGGG-UGGAa-GCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 53831 | 0.72 | 0.637308 |
Target: 5'- cGUGuGUCGCcGCcugGGCCCCGCCgaUCGCc -3' miRNA: 3'- -CACuCAGUGcCG---UUGGGGUGGa-AGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 102391 | 0.72 | 0.647551 |
Target: 5'- --cGGUCgGCGGCGAuggcCCCCACCagCGCg -3' miRNA: 3'- cacUCAG-UGCCGUU----GGGGUGGaaGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 121197 | 0.72 | 0.647551 |
Target: 5'- -cGGGaCcCGaGCAGCCCCGCCU-CGCu -3' miRNA: 3'- caCUCaGuGC-CGUUGGGGUGGAaGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 153685 | 0.72 | 0.657781 |
Target: 5'- -gGGGaCGCGGgGGCCgCCGCCggCGCa -3' miRNA: 3'- caCUCaGUGCCgUUGG-GGUGGaaGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 19970 | 0.71 | 0.678172 |
Target: 5'- -cGAGcCGCGaUAGCCCCGCCggaCGCg -3' miRNA: 3'- caCUCaGUGCcGUUGGGGUGGaa-GCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 113653 | 0.71 | 0.698412 |
Target: 5'- uGUGGGUgGCGGCGGCggaCugCUUUGCc -3' miRNA: 3'- -CACUCAgUGCCGUUGgg-GugGAAGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 3912 | 0.71 | 0.708452 |
Target: 5'- -cGGGcCACGGCu-CCCCGCUgacguacccgUCGCg -3' miRNA: 3'- caCUCaGUGCCGuuGGGGUGGa---------AGCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 92497 | 0.7 | 0.728329 |
Target: 5'- ----uUCACGGCGGCCgCCACCUg-GCc -3' miRNA: 3'- cacucAGUGCCGUUGG-GGUGGAagCG- -5' |
|||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 15379 | 0.7 | 0.738148 |
Target: 5'- cGUGGG-CGCGGCGgagGCgCCCACCggacccggggUUGCg -3' miRNA: 3'- -CACUCaGUGCCGU---UG-GGGUGGa---------AGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home