miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 88 0.69 0.794791
Target:  5'- -cGGGcggCAgGGCAGCCCCGCg--CGCc -3'
miRNA:   3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 414 0.78 0.332688
Target:  5'- -cGAGcUCGCGGCAGCCCCuccccCCcgCGCg -3'
miRNA:   3'- caCUC-AGUGCCGUUGGGGu----GGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 543 0.7 0.738148
Target:  5'- -cGAGcUCGCaGCAGCCCCucCCUccCGCg -3'
miRNA:   3'- caCUC-AGUGcCGUUGGGGu-GGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 1509 0.69 0.81259
Target:  5'- -cGAG--GCGGCGGCCCgGCCguccagCGCc -3'
miRNA:   3'- caCUCagUGCCGUUGGGgUGGaa----GCG- -5'
5510 5' -55.5 NC_001798.1 + 2857 0.7 0.76701
Target:  5'- --cGGcCACGGCGGCCUCGCUgcCGCc -3'
miRNA:   3'- cacUCaGUGCCGUUGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 3504 0.67 0.883695
Target:  5'- --uGGcCACGGCGGCCgCCACgUgCGCc -3'
miRNA:   3'- cacUCaGUGCCGUUGG-GGUGgAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 3912 0.71 0.708452
Target:  5'- -cGGGcCACGGCu-CCCCGCUgacguacccgUCGCg -3'
miRNA:   3'- caCUCaGUGCCGuuGGGGUGGa---------AGCG- -5'
5510 5' -55.5 NC_001798.1 + 4023 0.75 0.48718
Target:  5'- cGUGGcGUCGCGGcCGGCCaCCGCCg-CGCg -3'
miRNA:   3'- -CACU-CAGUGCC-GUUGG-GGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 4147 0.69 0.803768
Target:  5'- -gGGGcccUCGCgGGCAcCCCCGCCUccUCGUc -3'
miRNA:   3'- caCUC---AGUG-CCGUuGGGGUGGA--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 4340 0.66 0.926814
Target:  5'- aUGAGUCAgaGGCGGCCgagCGCCggcggggggCGCg -3'
miRNA:   3'- cACUCAGUg-CCGUUGGg--GUGGaa-------GCG- -5'
5510 5' -55.5 NC_001798.1 + 8745 0.66 0.915674
Target:  5'- --aAGUCguuGGCGGCCUCGUCUUCGCu -3'
miRNA:   3'- cacUCAGug-CCGUUGGGGUGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 10972 0.67 0.876614
Target:  5'- -aGAGUCggGCGGCGACUCCuuaaaugCGCg -3'
miRNA:   3'- caCUCAG--UGCCGUUGGGGuggaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 15298 0.68 0.838038
Target:  5'- gGUG-GUCGCGGCGACCgaaACgUUgGCg -3'
miRNA:   3'- -CACuCAGUGCCGUUGGgg-UGgAAgCG- -5'
5510 5' -55.5 NC_001798.1 + 15379 0.7 0.738148
Target:  5'- cGUGGG-CGCGGCGgagGCgCCCACCggacccggggUUGCg -3'
miRNA:   3'- -CACUCaGUGCCGU---UG-GGGUGGa---------AGCG- -5'
5510 5' -55.5 NC_001798.1 + 19970 0.71 0.678172
Target:  5'- -cGAGcCGCGaUAGCCCCGCCggaCGCg -3'
miRNA:   3'- caCUCaGUGCcGUUGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 20260 0.68 0.854079
Target:  5'- -cGAGaUCugcagcaGGCGGCCCCACgUgCGCg -3'
miRNA:   3'- caCUC-AGug-----CCGUUGGGGUGgAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 24726 0.76 0.431665
Target:  5'- -cGGG-CGCGGCcGCCCCGCCgcaCGCc -3'
miRNA:   3'- caCUCaGUGCCGuUGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 25899 0.67 0.897183
Target:  5'- cGUGGucUCGCGGCAGCacgCCUACCUggccUGCg -3'
miRNA:   3'- -CACUc-AGUGCCGUUG---GGGUGGAa---GCG- -5'
5510 5' -55.5 NC_001798.1 + 27938 0.66 0.932024
Target:  5'- -gGGGUCcCGGCGccgGCCgCGCCccggCGCu -3'
miRNA:   3'- caCUCAGuGCCGU---UGGgGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 28274 0.68 0.829733
Target:  5'- -cGGGcCGCaGCGcccccuuccGCCCCACCUggCGCu -3'
miRNA:   3'- caCUCaGUGcCGU---------UGGGGUGGAa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.