Results 81 - 100 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5511 | 3' | -53.9 | NC_001798.1 | + | 8907 | 0.68 | 0.911734 |
Target: 5'- gCGAAGGUGGGGuuGCCGugacucACGAUUUUUa -3' miRNA: 3'- -GCUUCUGCUCCggCGGU------UGCUGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 4744 | 0.68 | 0.911734 |
Target: 5'- cCGGAcGcCGGGGCCGCCucguCGGCaUCg -3' miRNA: 3'- -GCUU-CuGCUCCGGCGGuu--GCUGaAGg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 149681 | 0.68 | 0.911137 |
Target: 5'- cCGGGcuCGGGGCCGCCcucgcguGGCGcguCUUCCu -3' miRNA: 3'- -GCUUcuGCUCCGGCGG-------UUGCu--GAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 121867 | 0.68 | 0.923178 |
Target: 5'- gGGAGGCGAcacGGCCaccGCgGAgGACgugUCCa -3' miRNA: 3'- gCUUCUGCU---CCGG---CGgUUgCUGa--AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 134636 | 0.68 | 0.923178 |
Target: 5'- uCGAGGuguGCGAGGUCGgCCuGCGGCc-CCg -3' miRNA: 3'- -GCUUC---UGCUCCGGC-GGuUGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 15554 | 0.68 | 0.935651 |
Target: 5'- cCGGccccGGGCGuuGCCGCCGccgcggcggggagugGCGACgacUCCa -3' miRNA: 3'- -GCU----UCUGCucCGGCGGU---------------UGCUGa--AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 113122 | 0.68 | 0.933667 |
Target: 5'- uGGuAGACGAGGCCGCguGUGGCg--- -3' miRNA: 3'- gCU-UCUGCUCCGGCGguUGCUGaagg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 100791 | 0.68 | 0.933667 |
Target: 5'- gGggGGCGGgugucGGCCGUCucggGCGugUccUCCu -3' miRNA: 3'- gCuuCUGCU-----CCGGCGGu---UGCugA--AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 22769 | 0.68 | 0.933667 |
Target: 5'- aCGAGGACGggggacgucuccGGGCCGCggcggaGACGACcggcggCCc -3' miRNA: 3'- -GCUUCUGC------------UCCGGCGg-----UUGCUGaa----GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 25186 | 0.68 | 0.928542 |
Target: 5'- cCGccGACGccGCCGCCG-CGGCcgCCg -3' miRNA: 3'- -GCuuCUGCucCGGCGGUuGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 149246 | 0.68 | 0.928542 |
Target: 5'- gCGggGGCGucGCCGgCCGGCGcggGCgcgCCc -3' miRNA: 3'- -GCuuCUGCucCGGC-GGUUGC---UGaa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 91659 | 0.68 | 0.928542 |
Target: 5'- aGggGGCGuGGCCGCC-----CUUCUa -3' miRNA: 3'- gCuuCUGCuCCGGCGGuugcuGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 26187 | 0.68 | 0.928542 |
Target: 5'- cCGGcgcuGGACGgccGGGCCGCCGccucgggcgcggGCGACg-CCa -3' miRNA: 3'- -GCU----UCUGC---UCCGGCGGU------------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 24168 | 0.68 | 0.928542 |
Target: 5'- uGgcGGCG-GGCCGCUu-CGGCUggggCCu -3' miRNA: 3'- gCuuCUGCuCCGGCGGuuGCUGAa---GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 75561 | 0.68 | 0.928542 |
Target: 5'- gGcGGACGuGGCCGCCcacCGGCcccucaUCCa -3' miRNA: 3'- gCuUCUGCuCCGGCGGuu-GCUGa-----AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 76124 | 0.68 | 0.928017 |
Target: 5'- cCGggGagccguauacagcGCGaAGGCCcugcagGCCAGCGACagCCa -3' miRNA: 3'- -GCuuC-------------UGC-UCCGG------CGGUUGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 119887 | 0.68 | 0.928017 |
Target: 5'- gGggGAucccgguCGGGGCCGCCAgguaaauggccAUGAUgaCCg -3' miRNA: 3'- gCuuCU-------GCUCCGGCGGU-----------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 84495 | 0.68 | 0.923178 |
Target: 5'- uCGAAcGCGucccccgggcGGCCGCCGuAgGGCUUCCc -3' miRNA: 3'- -GCUUcUGCu---------CCGGCGGU-UgCUGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 62567 | 0.68 | 0.923178 |
Target: 5'- --cGGACGucGCCGCCAcgucauccACGACgccCCg -3' miRNA: 3'- gcuUCUGCucCGGCGGU--------UGCUGaa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 24581 | 0.69 | 0.905657 |
Target: 5'- gCGGAGGCG-GGCCgcgugGCCGugGAgUgCCu -3' miRNA: 3'- -GCUUCUGCuCCGG-----CGGUugCUgAaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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