Results 121 - 140 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5511 | 3' | -53.9 | NC_001798.1 | + | 36559 | 0.69 | 0.899345 |
Target: 5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3' miRNA: 3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 36517 | 0.69 | 0.899345 |
Target: 5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3' miRNA: 3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 23046 | 0.69 | 0.899345 |
Target: 5'- uCGAugguGGACGAGGCCGUUcgcACGA--UCCc -3' miRNA: 3'- -GCU----UCUGCUCCGGCGGu--UGCUgaAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 22204 | 0.69 | 0.899345 |
Target: 5'- aGggGAgCGAGcCCGCCcGCGACgagggUCUc -3' miRNA: 3'- gCuuCU-GCUCcGGCGGuUGCUGa----AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 86959 | 0.69 | 0.899345 |
Target: 5'- uGGAGcucugccugcACGAGcGCCGUCGcuaccGCGGCUUCUu -3' miRNA: 3'- gCUUC----------UGCUC-CGGCGGU-----UGCUGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 23551 | 0.7 | 0.856745 |
Target: 5'- aGGAGGCGGGGgUGCCcGCGAgggCCc -3' miRNA: 3'- gCUUCUGCUCCgGCGGuUGCUgaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 61851 | 0.7 | 0.855969 |
Target: 5'- cCGggGaACGcGGGCCGCCGGCccagcccGGCggCCc -3' miRNA: 3'- -GCuuC-UGC-UCCGGCGGUUG-------CUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 121297 | 0.7 | 0.848901 |
Target: 5'- cCGAcGGUGGGGCgGCCG-CGaACUUCCg -3' miRNA: 3'- -GCUuCUGCUCCGgCGGUuGC-UGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 12243 | 0.7 | 0.848106 |
Target: 5'- aGAccAGACugaccguGGGGCCGCgGACGACcaggCCg -3' miRNA: 3'- gCU--UCUG-------CUCCGGCGgUUGCUGaa--GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 44852 | 0.7 | 0.84651 |
Target: 5'- uGggGugGGGGaaaGCCGgcgcagagccgcgcGCGugUUCCg -3' miRNA: 3'- gCuuCugCUCCgg-CGGU--------------UGCugAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 85975 | 0.7 | 0.840862 |
Target: 5'- aCGggGAguuCGAGGCCGCCGccGgGGCg--- -3' miRNA: 3'- -GCuuCU---GCUCCGGCGGU--UgCUGaagg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 2679 | 0.7 | 0.856745 |
Target: 5'- gCGGAGGCGGGcGCgGCgAGCGAgUcggCCg -3' miRNA: 3'- -GCUUCUGCUC-CGgCGgUUGCUgAa--GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 51084 | 0.7 | 0.856745 |
Target: 5'- gCGAGGuCGAGGCCGCgGgggagauggcgaGCGAagagCCg -3' miRNA: 3'- -GCUUCuGCUCCGGCGgU------------UGCUgaa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 99509 | 0.7 | 0.856745 |
Target: 5'- aCGAAGGCccGGGCCacgucGCCGACGAC--CCg -3' miRNA: 3'- -GCUUCUGc-UCCGG-----CGGUUGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 150471 | 0.7 | 0.856745 |
Target: 5'- gCGggGGCGcgcGGCgCGCCccGACGACUguggcagaccUCCc -3' miRNA: 3'- -GCuuCUGCu--CCG-GCGG--UUGCUGA----------AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 62446 | 0.7 | 0.856745 |
Target: 5'- --cGGACGucgccgguGGGCCGCgCGACGGCgcCCg -3' miRNA: 3'- gcuUCUGC--------UCCGGCG-GUUGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 38626 | 0.7 | 0.86363 |
Target: 5'- aGggGGCGAuagugugacuGGCCGUCAgcucgcacacGCGACUggaacacUCCu -3' miRNA: 3'- gCuuCUGCU----------CCGGCGGU----------UGCUGA-------AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 91240 | 0.7 | 0.864385 |
Target: 5'- gCGAGGugGGGGUuguagaaguucUGCCGGCGGCa--- -3' miRNA: 3'- -GCUUCugCUCCG-----------GCGGUUGCUGaagg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 104088 | 0.7 | 0.864385 |
Target: 5'- uGAGGcgcACGAGcGCCGCCuggcgggcgcccGACGACauaUCCa -3' miRNA: 3'- gCUUC---UGCUC-CGGCGG------------UUGCUGa--AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 12903 | 0.7 | 0.840862 |
Target: 5'- aCGggGGCuuGGGGCCGugccacCCGGCGAUUUUUa -3' miRNA: 3'- -GCuuCUG--CUCCGGC------GGUUGCUGAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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