miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 99509 0.7 0.856745
Target:  5'- aCGAAGGCccGGGCCacgucGCCGACGAC--CCg -3'
miRNA:   3'- -GCUUCUGc-UCCGG-----CGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 51084 0.7 0.856745
Target:  5'- gCGAGGuCGAGGCCGCgGgggagauggcgaGCGAagagCCg -3'
miRNA:   3'- -GCUUCuGCUCCGGCGgU------------UGCUgaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 2679 0.7 0.856745
Target:  5'- gCGGAGGCGGGcGCgGCgAGCGAgUcggCCg -3'
miRNA:   3'- -GCUUCUGCUC-CGgCGgUUGCUgAa--GG- -5'
5511 3' -53.9 NC_001798.1 + 23551 0.7 0.856745
Target:  5'- aGGAGGCGGGGgUGCCcGCGAgggCCc -3'
miRNA:   3'- gCUUCUGCUCCgGCGGuUGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 61851 0.7 0.855969
Target:  5'- cCGggGaACGcGGGCCGCCGGCccagcccGGCggCCc -3'
miRNA:   3'- -GCuuC-UGC-UCCGGCGGUUG-------CUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 62446 0.7 0.856745
Target:  5'- --cGGACGucgccgguGGGCCGCgCGACGGCgcCCg -3'
miRNA:   3'- gcuUCUGC--------UCCGGCG-GUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 85975 0.7 0.840862
Target:  5'- aCGggGAguuCGAGGCCGCCGccGgGGCg--- -3'
miRNA:   3'- -GCuuCU---GCUCCGGCGGU--UgCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 82842 0.7 0.835946
Target:  5'- cCGccGACGAaccacccggcccauuGGCCGCCGACcACcUCCa -3'
miRNA:   3'- -GCuuCUGCU---------------CCGGCGGUUGcUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 121297 0.7 0.848901
Target:  5'- cCGAcGGUGGGGCgGCCG-CGaACUUCCg -3'
miRNA:   3'- -GCUuCUGCUCCGgCGGUuGC-UGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 12243 0.7 0.848106
Target:  5'- aGAccAGACugaccguGGGGCCGCgGACGACcaggCCg -3'
miRNA:   3'- gCU--UCUG-------CUCCGGCGgUUGCUGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 6634 0.7 0.840862
Target:  5'- gGggGACGGGGCC-CCGAUcccaACaUCCg -3'
miRNA:   3'- gCuuCUGCUCCGGcGGUUGc---UGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 44852 0.7 0.84651
Target:  5'- uGggGugGGGGaaaGCCGgcgcagagccgcgcGCGugUUCCg -3'
miRNA:   3'- gCuuCugCUCCgg-CGGU--------------UGCugAAGG- -5'
5511 3' -53.9 NC_001798.1 + 12903 0.7 0.840862
Target:  5'- aCGggGGCuuGGGGCCGugccacCCGGCGAUUUUUa -3'
miRNA:   3'- -GCuuCUG--CUCCGGC------GGUUGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 91089 0.69 0.892801
Target:  5'- cCGGAGGC--GGCCGUCGugGACc-CCg -3'
miRNA:   3'- -GCUUCUGcuCCGGCGGUugCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 23743 0.69 0.892801
Target:  5'- aCGccGACGcGGCCuCCGGCGcCUUCUa -3'
miRNA:   3'- -GCuuCUGCuCCGGcGGUUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 102497 0.69 0.886029
Target:  5'- gCGggGACG-GGCCggcGCCGGgGugU-CCg -3'
miRNA:   3'- -GCuuCUGCuCCGG---CGGUUgCugAaGG- -5'
5511 3' -53.9 NC_001798.1 + 105190 0.69 0.886716
Target:  5'- gCGgcGGCGGGGcCCGCgGugGGCgacggcgcugccccgUCCg -3'
miRNA:   3'- -GCuuCUGCUCC-GGCGgUugCUGa--------------AGG- -5'
5511 3' -53.9 NC_001798.1 + 36517 0.69 0.899345
Target:  5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3'
miRNA:   3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 54689 0.69 0.899345
Target:  5'- gCGGcucAGcGCGAGGCCGCCGgggucuACGACg--- -3'
miRNA:   3'- -GCU---UC-UGCUCCGGCGGU------UGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 16193 0.69 0.892801
Target:  5'- gGggGACGcacGGGCCGCCcucCGcACgcgCCg -3'
miRNA:   3'- gCuuCUGC---UCCGGCGGuu-GC-UGaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.