Results 81 - 100 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5511 | 3' | -53.9 | NC_001798.1 | + | 76659 | 0.69 | 0.899345 |
Target: 5'- gCGAGGGCcaugGAGGCgGCCAagaugACGGCggagcucgcUCCg -3' miRNA: 3'- -GCUUCUG----CUCCGgCGGU-----UGCUGa--------AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 105392 | 0.69 | 0.886029 |
Target: 5'- gGAGGGCGgcguucuccaGGGCCGCC-GCGGCcgCg -3' miRNA: 3'- gCUUCUGC----------UCCGGCGGuUGCUGaaGg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 50211 | 0.69 | 0.908116 |
Target: 5'- gGAcGGCGAGGagguggauaugacgcCCGCCGacgcccuggACGACUUCg -3' miRNA: 3'- gCUuCUGCUCC---------------GGCGGU---------UGCUGAAGg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 36601 | 0.69 | 0.899345 |
Target: 5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3' miRNA: 3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 23743 | 0.69 | 0.892801 |
Target: 5'- aCGccGACGcGGCCuCCGGCGcCUUCUa -3' miRNA: 3'- -GCuuCUGCuCCGGcGGUUGCuGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 86959 | 0.69 | 0.899345 |
Target: 5'- uGGAGcucugccugcACGAGcGCCGUCGcuaccGCGGCUUCUu -3' miRNA: 3'- gCUUC----------UGCUC-CGGCGGU-----UGCUGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 22204 | 0.69 | 0.899345 |
Target: 5'- aGggGAgCGAGcCCGCCcGCGACgagggUCUc -3' miRNA: 3'- gCuuCU-GCUCcGGCGGuUGCUGa----AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 36517 | 0.69 | 0.899345 |
Target: 5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3' miRNA: 3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 36559 | 0.69 | 0.899345 |
Target: 5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3' miRNA: 3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 4704 | 0.69 | 0.903787 |
Target: 5'- -cGAGACGAcgccguccgcggcaGGCuCGUCGACGGCcUCCc -3' miRNA: 3'- gcUUCUGCU--------------CCG-GCGGUUGCUGaAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 102497 | 0.69 | 0.886029 |
Target: 5'- gCGggGACG-GGCCggcGCCGGgGugU-CCg -3' miRNA: 3'- -GCuuCUGCuCCGG---CGGUUgCugAaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 84747 | 0.69 | 0.871816 |
Target: 5'- gGgcGGCGGGGCCGUCgGGCG-CUUUUa -3' miRNA: 3'- gCuuCUGCUCCGGCGG-UUGCuGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 23046 | 0.69 | 0.899345 |
Target: 5'- uCGAugguGGACGAGGCCGUUcgcACGA--UCCc -3' miRNA: 3'- -GCU----UCUGCUCCGGCGGu--UGCUgaAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 91089 | 0.69 | 0.892801 |
Target: 5'- cCGGAGGC--GGCCGUCGugGACc-CCg -3' miRNA: 3'- -GCUUCUGcuCCGGCGGUugCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 105190 | 0.69 | 0.886716 |
Target: 5'- gCGgcGGCGGGGcCCGCgGugGGCgacggcgcugccccgUCCg -3' miRNA: 3'- -GCuuCUGCUCC-GGCGgUugCUGa--------------AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 1145 | 0.69 | 0.879032 |
Target: 5'- uCGgcGGCGuGGCCaGCCccGCGGCggUCCc -3' miRNA: 3'- -GCuuCUGCuCCGG-CGGu-UGCUGa-AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 117672 | 0.69 | 0.879032 |
Target: 5'- gCGggGACGcgcGGCCGgCGGCGugUa-- -3' miRNA: 3'- -GCuuCUGCu--CCGGCgGUUGCugAagg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 53621 | 0.69 | 0.879032 |
Target: 5'- -cAAGAgCGGGGCCGCC-GCGGCcaaguacgCCg -3' miRNA: 3'- gcUUCU-GCUCCGGCGGuUGCUGaa------GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 16193 | 0.69 | 0.892801 |
Target: 5'- gGggGACGcacGGGCCGCCcucCGcACgcgCCg -3' miRNA: 3'- gCuuCUGC---UCCGGCGGuu-GC-UGaa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 4744 | 0.68 | 0.911734 |
Target: 5'- cCGGAcGcCGGGGCCGCCucguCGGCaUCg -3' miRNA: 3'- -GCUU-CuGCUCCGGCGGuu--GCUGaAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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