miRNA display CGI


Results 81 - 100 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 102497 0.69 0.886029
Target:  5'- gCGggGACG-GGCCggcGCCGGgGugU-CCg -3'
miRNA:   3'- -GCuuCUGCuCCGG---CGGUUgCugAaGG- -5'
5511 3' -53.9 NC_001798.1 + 105392 0.69 0.886029
Target:  5'- gGAGGGCGgcguucuccaGGGCCGCC-GCGGCcgCg -3'
miRNA:   3'- gCUUCUGC----------UCCGGCGGuUGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 105190 0.69 0.886716
Target:  5'- gCGgcGGCGGGGcCCGCgGugGGCgacggcgcugccccgUCCg -3'
miRNA:   3'- -GCuuCUGCUCC-GGCGgUugCUGa--------------AGG- -5'
5511 3' -53.9 NC_001798.1 + 91089 0.69 0.892801
Target:  5'- cCGGAGGC--GGCCGUCGugGACc-CCg -3'
miRNA:   3'- -GCUUCUGcuCCGGCGGUugCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 23743 0.69 0.892801
Target:  5'- aCGccGACGcGGCCuCCGGCGcCUUCUa -3'
miRNA:   3'- -GCuuCUGCuCCGGcGGUUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 16193 0.69 0.892801
Target:  5'- gGggGACGcacGGGCCGCCcucCGcACgcgCCg -3'
miRNA:   3'- gCuuCUGC---UCCGGCGGuu-GC-UGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 148088 0.69 0.899345
Target:  5'- cCGggGGcCGGGGCCGCUAGgGAa---- -3'
miRNA:   3'- -GCuuCU-GCUCCGGCGGUUgCUgaagg -5'
5511 3' -53.9 NC_001798.1 + 36559 0.69 0.899345
Target:  5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3'
miRNA:   3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 115708 0.69 0.899345
Target:  5'- uCGcGGGCGuGGCCGacgucgagcuucCCGGCGGCgaagUCCc -3'
miRNA:   3'- -GCuUCUGCuCCGGC------------GGUUGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 36601 0.69 0.899345
Target:  5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3'
miRNA:   3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 36517 0.69 0.899345
Target:  5'- gCGggGGCGcgcGGCgGCCGggcgggggcgcGCGGCggCCg -3'
miRNA:   3'- -GCuuCUGCu--CCGgCGGU-----------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 23046 0.69 0.899345
Target:  5'- uCGAugguGGACGAGGCCGUUcgcACGA--UCCc -3'
miRNA:   3'- -GCU----UCUGCUCCGGCGGu--UGCUgaAGG- -5'
5511 3' -53.9 NC_001798.1 + 76659 0.69 0.899345
Target:  5'- gCGAGGGCcaugGAGGCgGCCAagaugACGGCggagcucgcUCCg -3'
miRNA:   3'- -GCUUCUG----CUCCGgCGGU-----UGCUGa--------AGG- -5'
5511 3' -53.9 NC_001798.1 + 22204 0.69 0.899345
Target:  5'- aGggGAgCGAGcCCGCCcGCGACgagggUCUc -3'
miRNA:   3'- gCuuCU-GCUCcGGCGGuUGCUGa----AGG- -5'
5511 3' -53.9 NC_001798.1 + 86959 0.69 0.899345
Target:  5'- uGGAGcucugccugcACGAGcGCCGUCGcuaccGCGGCUUCUu -3'
miRNA:   3'- gCUUC----------UGCUC-CGGCGGU-----UGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 54689 0.69 0.899345
Target:  5'- gCGGcucAGcGCGAGGCCGCCGgggucuACGACg--- -3'
miRNA:   3'- -GCU---UC-UGCUCCGGCGGU------UGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 4704 0.69 0.903787
Target:  5'- -cGAGACGAcgccguccgcggcaGGCuCGUCGACGGCcUCCc -3'
miRNA:   3'- gcUUCUGCU--------------CCG-GCGGUUGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 24581 0.69 0.905657
Target:  5'- gCGGAGGCG-GGCCgcgugGCCGugGAgUgCCu -3'
miRNA:   3'- -GCUUCUGCuCCGG-----CGGUugCUgAaGG- -5'
5511 3' -53.9 NC_001798.1 + 50211 0.69 0.908116
Target:  5'- gGAcGGCGAGGagguggauaugacgcCCGCCGacgcccuggACGACUUCg -3'
miRNA:   3'- gCUuCUGCUCC---------------GGCGGU---------UGCUGAAGg -5'
5511 3' -53.9 NC_001798.1 + 149681 0.68 0.911137
Target:  5'- cCGGGcuCGGGGCCGCCcucgcguGGCGcguCUUCCu -3'
miRNA:   3'- -GCUUcuGCUCCGGCGG-------UUGCu--GAAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.