miRNA display CGI


Results 101 - 120 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 88041 0.68 0.911734
Target:  5'- gGAGGGCaGGGCCGCUgggggGGCgGGCUcgUCCc -3'
miRNA:   3'- gCUUCUGcUCCGGCGG-----UUG-CUGA--AGG- -5'
5511 3' -53.9 NC_001798.1 + 3891 0.68 0.911734
Target:  5'- cCGggGGCGggGGGCCGgCCccgggccACGGCUcCCc -3'
miRNA:   3'- -GCuuCUGC--UCCGGC-GGu------UGCUGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 4744 0.68 0.911734
Target:  5'- cCGGAcGcCGGGGCCGCCucguCGGCaUCg -3'
miRNA:   3'- -GCUU-CuGCUCCGGCGGuu--GCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 8907 0.68 0.911734
Target:  5'- gCGAAGGUGGGGuuGCCGugacucACGAUUUUUa -3'
miRNA:   3'- -GCUUCUGCUCCggCGGU------UGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 77400 0.68 0.917575
Target:  5'- uGggGuCGGcGGCCGCCGACcugguagUCCa -3'
miRNA:   3'- gCuuCuGCU-CCGGCGGUUGcuga---AGG- -5'
5511 3' -53.9 NC_001798.1 + 122134 0.68 0.917575
Target:  5'- gGggGGCccccGGGCCGCgGGCGAggacgUCCu -3'
miRNA:   3'- gCuuCUGc---UCCGGCGgUUGCUga---AGG- -5'
5511 3' -53.9 NC_001798.1 + 25610 0.68 0.921522
Target:  5'- cCGggGGCGGgccccccccggaguGGuCCGCCGagcGCGGCgggcugUCCu -3'
miRNA:   3'- -GCuuCUGCU--------------CC-GGCGGU---UGCUGa-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 84495 0.68 0.923178
Target:  5'- uCGAAcGCGucccccgggcGGCCGCCGuAgGGCUUCCc -3'
miRNA:   3'- -GCUUcUGCu---------CCGGCGGU-UgCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 62567 0.68 0.923178
Target:  5'- --cGGACGucGCCGCCAcgucauccACGACgccCCg -3'
miRNA:   3'- gcuUCUGCucCGGCGGU--------UGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 134636 0.68 0.923178
Target:  5'- uCGAGGuguGCGAGGUCGgCCuGCGGCc-CCg -3'
miRNA:   3'- -GCUUC---UGCUCCGGC-GGuUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 121867 0.68 0.923178
Target:  5'- gGGAGGCGAcacGGCCaccGCgGAgGACgugUCCa -3'
miRNA:   3'- gCUUCUGCU---CCGG---CGgUUgCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 107410 0.68 0.923178
Target:  5'- gGAGGACuGGGGCCGgCUGACGGgggucgCCg -3'
miRNA:   3'- gCUUCUG-CUCCGGC-GGUUGCUgaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 26505 0.68 0.923178
Target:  5'- gCGggGACGGugcuGGCCGCgGcggGCGGCggCg -3'
miRNA:   3'- -GCuuCUGCU----CCGGCGgU---UGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 95688 0.68 0.923178
Target:  5'- gCGgcGGCgGGGGCgGCCGGCGuCgcCCg -3'
miRNA:   3'- -GCuuCUG-CUCCGgCGGUUGCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 28990 0.68 0.923178
Target:  5'- aGggGGCGGcGCCgGCCAACcGCgcgCCg -3'
miRNA:   3'- gCuuCUGCUcCGG-CGGUUGcUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 35279 0.68 0.923178
Target:  5'- aCGcGGGCGGGGCuCGggcucuCCGGCGGCUuaauggaucUCCg -3'
miRNA:   3'- -GCuUCUGCUCCG-GC------GGUUGCUGA---------AGG- -5'
5511 3' -53.9 NC_001798.1 + 85349 0.68 0.923178
Target:  5'- uGGAcACGGGGCCcuucGCCG-CGGCgUCCg -3'
miRNA:   3'- gCUUcUGCUCCGG----CGGUuGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 76124 0.68 0.928017
Target:  5'- cCGggGagccguauacagcGCGaAGGCCcugcagGCCAGCGACagCCa -3'
miRNA:   3'- -GCuuC-------------UGC-UCCGG------CGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 119887 0.68 0.928017
Target:  5'- gGggGAucccgguCGGGGCCGCCAgguaaauggccAUGAUgaCCg -3'
miRNA:   3'- gCuuCU-------GCUCCGGCGGU-----------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 75561 0.68 0.928542
Target:  5'- gGcGGACGuGGCCGCCcacCGGCcccucaUCCa -3'
miRNA:   3'- gCuUCUGCuCCGGCGGuu-GCUGa-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.