miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 52931 0.67 0.95575
Target:  5'- gGgcGACGAGGagaCCGCCGcccuccggGCGcACgugUCCg -3'
miRNA:   3'- gCuuCUGCUCC---GGCGGU--------UGC-UGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 53362 0.73 0.681923
Target:  5'- uCGuAGACG-GGCuCGCCAGCGAC--CCg -3'
miRNA:   3'- -GCuUCUGCuCCG-GCGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 53621 0.69 0.879032
Target:  5'- -cAAGAgCGGGGCCGCC-GCGGCcaaguacgCCg -3'
miRNA:   3'- gcUUCU-GCUCCGGCGGuUGCUGaa------GG- -5'
5511 3' -53.9 NC_001798.1 + 54689 0.69 0.899345
Target:  5'- gCGGcucAGcGCGAGGCCGCCGgggucuACGACg--- -3'
miRNA:   3'- -GCU---UC-UGCUCCGGCGGU------UGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 55008 0.66 0.962979
Target:  5'- uGccGGCGGGGCCGCCcugccgggaGACgccCCg -3'
miRNA:   3'- gCuuCUGCUCCGGCGGuug------CUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 55809 0.66 0.972211
Target:  5'- aCGggGGUGGGGUC-CCAcGCGACgcaUCCc -3'
miRNA:   3'- -GCuuCUGCUCCGGcGGU-UGCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 55910 0.67 0.942749
Target:  5'- gCGgcGACGAgcgcaaaGGCC-CCGACGAUcgcUCCg -3'
miRNA:   3'- -GCuuCUGCU-------CCGGcGGUUGCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 56416 0.66 0.969043
Target:  5'- gCGggGGCuGGuGGCUGCCGugGuGCUcuaggaccggaauUCCg -3'
miRNA:   3'- -GCuuCUG-CU-CCGGCGGUugC-UGA-------------AGG- -5'
5511 3' -53.9 NC_001798.1 + 56781 0.75 0.590077
Target:  5'- gGggGGCccuGGCCGCCGACGGCcgCg -3'
miRNA:   3'- gCuuCUGcu-CCGGCGGUUGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 58082 0.66 0.965947
Target:  5'- aCGGAGAaaaaGAGGCC-CCGcagggucGCGGCcgCCc -3'
miRNA:   3'- -GCUUCUg---CUCCGGcGGU-------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 61851 0.7 0.855969
Target:  5'- cCGggGaACGcGGGCCGCCGGCccagcccGGCggCCc -3'
miRNA:   3'- -GCuuC-UGC-UCCGGCGGUUG-------CUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 62446 0.7 0.856745
Target:  5'- --cGGACGucgccgguGGGCCGCgCGACGGCgcCCg -3'
miRNA:   3'- gcuUCUGC--------UCCGGCG-GUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 62567 0.68 0.923178
Target:  5'- --cGGACGucGCCGCCAcgucauccACGACgccCCg -3'
miRNA:   3'- gcuUCUGCucCGGCGGU--------UGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 63863 0.72 0.770373
Target:  5'- uCGAAGAggcggaGAGGCCGCCcAgGuuUUCCg -3'
miRNA:   3'- -GCUUCUg-----CUCCGGCGGuUgCugAAGG- -5'
5511 3' -53.9 NC_001798.1 + 64100 0.67 0.951799
Target:  5'- cCGGAauCGGGGCCGCCc-CGGCccCCg -3'
miRNA:   3'- -GCUUcuGCUCCGGCGGuuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 66899 0.77 0.472023
Target:  5'- aCGggGGCGGGGCCGUCGcuccaucuGCGACgaaCg -3'
miRNA:   3'- -GCuuCUGCUCCGGCGGU--------UGCUGaagG- -5'
5511 3' -53.9 NC_001798.1 + 67085 0.67 0.947618
Target:  5'- uCGGAcGACG-GGCCGUCugaccAUGACU-CCg -3'
miRNA:   3'- -GCUU-CUGCuCCGGCGGu----UGCUGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 71138 0.67 0.943204
Target:  5'- gCGGacGGACGcGGCCGUCuuCGACc-CCg -3'
miRNA:   3'- -GCU--UCUGCuCCGGCGGuuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 72672 0.66 0.974883
Target:  5'- aCGAGGguaACGugcuGGCCGUCGuGCGGCgggaaaUCCa -3'
miRNA:   3'- -GCUUC---UGCu---CCGGCGGU-UGCUGa-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 73974 0.72 0.751344
Target:  5'- cCGcGGGCuccGGGCCGCCGcgcAUGugUUCCa -3'
miRNA:   3'- -GCuUCUGc--UCCGGCGGU---UGCugAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.